Salvia miltiorrhiza (redroot sage): 130992263
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Entry
130992263 CDS
T09291
Name
(RefSeq) formamidopyrimidine-DNA glycosylase isoform X1
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
130992263
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smil03400
]
130992263
Enzymes [BR:
smil01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
130992263
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
130992263
DNA repair and recombination proteins [BR:
smil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
130992263
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
Fpg-like_C
NFACT_N
Motif
Other DBs
NCBI-GeneID:
130992263
NCBI-ProteinID:
XP_057772799
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Position
7:8016930..8022919
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AA seq
408 aa
AA seq
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MPELPEVEAARRALAEHTVGKKIIKVIVADDSKVIDGVSPKDFEAALVGKTIVATHRKGK
NMWIELDSPPFPSFQFGMAGAVYIKGVAVTKYKRSVVKDTDEWPSKYSKLFVELADGLEF
SFTDKRRFAKVRLLDNPVSVPPISELGPDALTEPMTEDELCNSLKKKNIGIKALLLDQSF
LSGIGNWMADEVLYQARIHPLQTASSLSKECCTNLLKCINEVIEKALEVGADSSQFPDNW
IFNSREKKPGKAFVDGKKLDFIKAGGRTTAYVPELQKLSGNQAVKETDKRSKRTSSGKGG
GVDESGSEDEPMEPKVAKGRKSSSASKSSKKKSNASVEDSDGDDVPSKRKRGAKKPPAKS
KPKGGKNGEVERRQTRGKGASAKRKHEESDDNLSNSSENGVEDEEEDA
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgccggagctaccggaggttgaggcggcgcgtcgggcgctggcagagcacaccgtcggg
aagaagataataaaagtgattgtagctgatgattccaaagtcattgacggtgtctctccc
aaggacttcgaggcagcgctcgttggaaaaactatcgtcgccacgcatcggaagggaaag
aacatgtggattgaacttgattcccctcctttcccctcttttcaattcggaatggctggg
gctgtatatatcaagggagttgcagtcaccaaatataaaaggtctgtggtgaaggataca
gatgaatggccttccaagtattccaagttatttgttgaacttgctgatggtttggaattc
tcatttactgacaagaggcggtttgctaaagttcgcctgcttgacaatcctgtttctgtt
cccccaatctctgagcttgggcctgatgcattaacggagcccatgacagaagacgagctc
tgcaactcattgaaaaagaagaacattggaattaaggctcttttacttgaccagagtttt
ctttcaggcattggcaattggatggctgatgaagttttataccaagcaagaattcatcca
ctgcaaactgcttccagcctgtcgaaagaatgctgtacaaacttgctcaagtgcattaat
gaggtaattgaaaaggcacttgaggttggggccgacagtagtcagttccctgataattgg
attttcaattctcgggaaaagaagcccggcaaggcttttgttgatgggaagaaacttgac
ttcatcaaagctggtggcaggacaacagcttatgtccctgagttgcaaaagttgagtggc
aaccaagctgtaaaagagacagataaaagatctaagcgcactagttctggaaaaggtggc
ggtgttgatgagtcaggatcggaggatgagcctatggaaccaaaagttgcgaaagggagg
aagagtagtagtgctagtaagtcctcaaagaaaaagtccaatgccagtgttgaagactct
gatggtgatgatgtaccttcaaagagaaaaagaggggcaaagaagcctcctgcaaagagc
aaacccaagggaggcaaaaatggagaagtggagcggagacaaactagagggaaaggtgct
tctgcaaagagaaagcacgaggaaagtgatgacaacctcagtaattccagtgaaaatgga
gtcgaggatgaggaggaagatgcttag
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