Salvia miltiorrhiza (redroot sage): 130992538
Help
Entry
130992538 CDS
T09291
Name
(RefSeq) uncharacterized protein LOC130992538 isoform X1
KO
K06100
symplekin
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130992538
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smil03021
]
130992538
03019 Messenger RNA biogenesis [BR:
smil03019
]
130992538
Transcription machinery [BR:
smil03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
130992538
Messenger RNA biogenesis [BR:
smil03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
130992538
U7-dependent histone pre-mRNA processing factors
130992538
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
ASTN_1_2_N
CRM1_C
Motif
Other DBs
NCBI-GeneID:
130992538
NCBI-ProteinID:
XP_057773188
LinkDB
All DBs
Position
7:12230906..12255744
Genome browser
AA seq
1333 aa
AA seq
DB search
MAGALARDQALSLLAAANNHGDLAVKLSSLKQAKDILFSVEPSQAAELFPYLAELQSSPE
TLVRKYLLEVIDEVGAKTSTHLCILFPVLLTFLKDNNPVVAKQSIITGTKIFSSVLEELA
LQFQRRGIVERWLEELWTGLIKFRDAVLGIIFEAGPLGPKLLAIKFLETFILCFTLDSNE
FEMCNPEVMVRQGRMFNVSWIADSHPILNPPALISDANRYLGVLLDMLLSASNFPGCVTI
TAVNSLVAIARKRPVYYKTVLTALLDFSPGVEMAKGRHTVSIQYSLRTAFLGFLRCTHPL
MTESREKLLKELRAMNAGDAADQVIRQIDKIMRNNERASRDLQFNKDEQLSSQLHISGDL
TKKRTVPLDNEDQNNIFDASSKRFRHSPHNNTTATADSSDAGQDHVNGISAKPPVLDGDL
TPVEQMIAMIGALIAEGERGVESLEILISNIHADLLADIVITNMRHLPKNPPPLTRYGNS
SSNHPSDTSDPAQVVVSNGFATSTQTLDHAAQLPASSLSTLSIAVSDPFASANPSTDPKR
DPRRDPRRLDPRRLVVPLDVPPTSVLEDSFGTIQHAAVQSDFNPVSSSSVLLSVPQSVPE
SAPQPLMPTIQTDINLPDSPETIELDESIPKEEVHDFDANVITPDRDANNSLHLSLSNSK
AKDIVSHASMDVTMLDEAYSPSSEESDELLPDISNVEASESASVELPGLPSYIELDEDHQ
IHARRLALERIINKYQSSQRTDIKQTQIALVARLFAQIDASDVIGMAQKLIISDYEQQKG
HELVLHILYHLHSLVISDSASSAAAVYENFLLGVAKSLLVDLPASNKSFSRLLGEVPCIP
DSVLGILDDMCTKSHSGIDGRDGDRVTQGLGAVWSLILSRPLIRQACLDIALKCTVHPKD
DIQAKAIRLVSNKLYAVSYISDSIEQFAKNMFLSAVDQNSSDSLLSEAANSDRRIGGQVE
SAETSTSGSQVSEPGISANESIKGVQDAALDDPSNIFSQAHRLMSLFFALCAKKPVLLQL
VFDSYVRASKAVKQAVHRHINVLMRALGSSYSELLHIISNPPQGSEDLLTQVLHLLSEGR
APPTDLVVTVKHLYETRLKDATILIPILSAFSRDEVLPIFPRLVQLPLPKFQMALAHILQ
GSAHTGPALTPVEVLVAIHDISPERESLPLKKITDTCSACFEQRTVFTQQVLAKALNQMV
DRTPLPLLFMRTVIQAIDAFPTLVDFVMEILSKLVNRQVWRMPKLWVGFLKCISQTQPHS
FHVLLQLPSPQLESALSKYPNLRGPLAAFANQTSIKTSVPRTTLVLLGLAFETHMPQPHD
VSSLHASDGPTST
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atggccggcgccctggccagggaccaggcgctctccctgctcgctgcggcgaacaaccat
ggcgatttggccgtcaagctatcgtcattgaagcaggccaaagacatcttgttttctgtc
gagccgtcccaggcggcggagctttttccttacttggccgagcttcagtcttcccctgaa
acgctagtcaggaaatatctccttgaggtaattgatgaggttggggccaaaacaagcaca
catctttgcatattatttcctgtcttattgacatttttgaaagataataatcccgttgtt
gcaaagcaatctattatcactggcacaaaaattttctctagcgtgctggaagagttggca
ttgcagtttcaacggcgtggtatagttgagaggtggcttgaagagctttggacagggctg
ataaaatttagggatgctgttttgggaattatctttgaggcggggcctcttggtccaaaa
ttgttagcgataaagtttcttgaaacatttattttatgcttcacattggattcaaacgag
tttgaaatgtgcaaccctgaagtaatggtaaggcaaggaaggatgtttaatgtctcatgg
atagcggatagtcatcctattctgaatcctcctgcactcatatcagatgcaaatagatat
ctaggggtcttattggatatgttgctatcagctagtaattttcccggttgcgtgacaatt
actgctgtcaatagtcttgtagctattgcaaggaaaaggcctgtctactacaaaactgtc
ttgacggcactgcttgattttagtccaggtgtcgagatggctaagggccgtcatacagtc
agcattcagtattctctgagaactgcattcctaggatttttaaggtgtacacatcctctc
atgactgagtcaagagagaaattgcttaaagagttaagagcaatgaatgctggagatgct
gctgatcaagttatccgacaaatagataaaatcatgagaaacaatgagcgtgcttcacgc
gatcttcagttcaataaggatgagcagctgtcaagtcagttgcatatttcaggggatttg
acaaagaaaaggacagttccattggacaatgaggatcagaataatatctttgatgcctct
tctaagaggttccgtcacagtcctcataacaatacaactgccactgctgatagtagtgat
gctggtcaggatcatgtcaatggtatatccgctaaaccacctgtgttggatggggatctg
actccagttgagcagatgattgctatgattggcgctttaattgcagaaggagaaagagga
gttgagtctctggaaattctaatatccaatattcatgccgatttacttgctgatattgtc
atcacaaatatgaggcacttgccaaagaatcctcctccattgacaagatatggtaactcg
tcttcgaatcatcctagtgacactagtgatcctgcccaggtagttgtgtcaaatggtttt
gcaacttctacccagactttggaccatgcggctcaattacctgcttcatcactgagcacg
cttagcattgctgtttcagatccgtttgcttctgctaatccatctacagatcctaaacgt
gatccacgaagggatcctcgtcgccttgatcctaggcgcttggtggttcctcttgatgtg
cctccaacatctgttttggaagatagttttggtactatccaacatgcagctgtacagtct
gatttcaatcctgttagctcctccagtgtacttttatcagtacctcaatctgtgcctgaa
agtgctcctcagcctctgatgcccacaattcaaactgacataaatctgccagactcccca
gagacaattgaacttgatgagtctatcccgaaagaggaagtccatgattttgatgccaat
gtaatcactccagatagggatgcaaacaattctttacatctttcactatctaatagcaaa
gctaaggacattgtttctcatgcatcaatggatgtaaccatgcttgatgaggcttattcc
ccttcatcagaagaatctgatgaactattgccagatatttcaaatgtcgaagcatctgag
agtgcatctgttgagttgccagggcttccctcgtacattgagctcgatgaagatcatcaa
atacatgcaagaagattggcacttgagcggataattaataagtaccagagttcacagaga
acagatattaaacaaacacaaattgcactggttgcccgactgtttgcacagattgatgct
agtgatgtgattgggatggcgcagaaacttatcatatcagattatgaacagcaaaagggt
catgagctcgtgttgcatatcttatatcatctccatagtcttgtgatctcagactctgca
tcatctgctgctgctgtatatgagaatttccttttgggagtggcaaaatctttgctagtt
gatttaccagcatctaacaagtcttttagtcgacttcttggagaagttccatgcatacct
gattccgtattggggatattggatgacatgtgtaccaaaagtcattctggaattgatggt
cgtgatggggatcgtgtcactcagggccttggtgcagtgtggagcttaattcttagtcgt
cctctcattcgccaagcatgtctagatatagctctaaagtgtactgtgcacccaaaggat
gatatccaggctaaagctatacgcctggtgtcaaacaagctatacgcagttagctatatt
tctgatagcatcgagcaatttgcaaaaaacatgtttttgtcagctgtagatcagaattct
tcagattcattgctatctgaggctgcaaattcagacagaagaattggaggacaggtagaa
agtgcagaaacatcgactagtggttctcaagtttccgagcctgggatttcagcaaatgag
tctataaaaggagtccaggatgcagccctggatgatccatcaaatatattttctcaagct
cacaggctcatgtccttgttttttgcactctgtgctaagaaacctgttcttcttcaactg
gtttttgacagttacgtgcgtgcttcgaaggctgttaagcaggctgttcatcgtcatata
aatgttctgatgagggctctggggtcgtcgtattcagaattgcttcatataatatcaaat
ccaccccaagggagtgaagatttgttaacacaggttcttcatttgttgtccgaaggacga
gcaccacctacagatttggtggtgactgttaaacatttatatgaaactaggctgaaggat
gctactattcttattcctatcctatcagctttttctagagatgaggttttacctattttc
cctcggcttgtccagcttcctttgcctaagtttcagatggcactggctcatatattacag
ggttctgctcatacaggtcctgcattaacgcctgttgaagtcttggtggcaatccatgac
atttctcctgagagagaatctcttccactgaaaaagatcacggatacttgctcagcttgt
tttgagcagcgcacagtttttacacaacaagtcctggcaaaggccttaaaccagatggtg
gaccgaactccacttccactgctcttcatgagaactgtaatccaagcaattgatgctttt
ccgacactggttgattttgttatggaaattctgtccaaacttgtgaacaggcaggtttgg
agaatgccaaaactatgggtcggcttcttgaaatgtatctctcaaacacagccacattcc
ttccatgtattgctacagctgccatcacctcagctggaaagtgctctaagcaagtatcca
aatctccgtggtccacttgctgctttcgcaaaccaaaccagtattaaaacctctgtgcct
aggacgaccctagtgcttctcggccttgcatttgaaacacacatgccacaaccacacgat
gtttcatcgttgcacgcatctgatggcccgacgtctacgtga
DBGET
integrated database retrieval system
