Salvia miltiorrhiza (redroot sage): 130992558
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Entry
130992558 CDS
T09291
Name
(RefSeq) LOW QUALITY PROTEIN: protein ALTERED SEED GERMINATION 2
KO
K11807
WD and tetratricopeptide repeats protein 1
Organism
smil
Salvia miltiorrhiza (redroot sage)
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smil04121
]
130992558
Ubiquitin system [BR:
smil04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
130992558
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Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR75_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_IFT122_1st
NBCH_WD40
ANAPC4_WD40
Beta-prop_HPS5
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_WDR90_POC16_2nd
Beta-prop_DCAF12
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
ANAPC3
TPR_17
Motif
Other DBs
NCBI-GeneID:
130992558
NCBI-ProteinID:
XP_057773219
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Position
7:complement(11725689..11744862)
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AA seq
758 aa
AA seq
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MDYSICFHDGSITDLINSRTLHTHHDFNHAVQMHSSLVRRLSLERELEGHRGCVNAIAWN
SEGSMLISGSDDTRVNVWSYSSRKLMHSIETGHSANIFCTKFVPETSDELVVSGAADAEV
RLFNLSRLGENGLEGSGISPSAVFQCHTRRVKKLAVEAGNPNLVWSASEDGTLRQHDFRE
GSSCPPAGSCHQECRNVLLDLRCGAKKSLADPPKQSLALKSCDISSTRPHLLLVGGSDAF
ARLYDRRMLPPLSSSQNKLPPPPCVNYFCPMHLSDLGHSSLHPTHVTFSPNGEEVLLSYS
GEHVYLMDINHVSGNTMRYTSTDVSKLTSLSPILNKVQVQSSLSGVSLNGFPVRNKAALD
KCRKLIRFAEKSLKGETDRYYGIEACNEVLDGHGYEIGSTLMQECLCIRASLLLKRRWKN
DSHMAIRDCHRALNINPSSTRALICMAEALSMLEKHKEALEFAFAAQTSAPSDFEIMERV
EHIKKSSAVAEAEKTSIESDRRSRANYRARRVLSLSDIIYHTEGENDAPSGHEREDSDYD
DELELDFETLIPAEGGHDVESNVLPRNLNLRIHRRGDLNLEPGSVTGSCGLPVLSCENDK
VPYRPEMAIDMKQRYVGHCNTGTDIKQASFIGQRGEYVASGSDDGRWFIWEKKTGRLLKM
LHGDDAVVNCIQCHPYDCVIATSGIDSTIKIWTPNSRVPSNVAGEEGPEPSNVLEAMEEN
QRRLYCSREAILPFEILERFRMHDFAEGSFHPFECTQS
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atggactactccatctgctttcacgacggcagcatcaccgacttgattaactctcgcaca
ctccacactcatcatgattttaaccatgctgtgcagatgcactcctcacttgtgcggagg
ctttcactggaaagagaactagaggggcaccgtggatgtgtaaatgctatagcttggaat
tcagaaggctctatgctgatttcaggatctgatgatacgcgcgttaacgtctggtcctat
tcaagtcgaaaacttatgcactcaattgagactggccattctgccaacattttctgtaca
aaattcgtccctgaaacttcagatgaattggtagtttctggggcagctgatgctgaggta
cgcctattcaatttgtcccgtttaggagagaacggactggaggggagtggtatcagtcca
tcagcagttttccagtgtcacactaggagggttaaaaaattagctgtggaagctggaaat
cctaatctggtgtggagtgccagtgaagatgggacacttcggcagcatgattttcgtgag
ggttcttcttgtcctcctgctgggtcctgtcatcaagaatgtcgtaatgtccttcttgat
ttgcgttgtggagctaaaaaatcactagcagatcctccaaagcagtcccttgctttgaaa
tcttgtgatatcagttccactaggccccatttactccttgttggcggcagtgatgcattt
gcacgtctatacgatagacgaatgcttccgcctctctcatctagtcagaataagctgcca
ccacctccttgcgtgaactacttttgcccaatgcatctatctgaccttggacattccagc
ttgcatcccactcatgttacttttagtcctaatggagaggaggttcttcttagttatagc
ggggaacatgtatacctgatggacattaatcacgtttctgggaatacaatgagatatacc
tcaactgatgtctcaaagctaaccagcctgagtcccatactcaacaaagtacaagtgcaa
tcatccctttcaggtgtatccttaaatggttttcctgtgagaaataaagctgcacttgat
aagtgcaggaaactaatccgttttgctgaaaaatcattgaaaggagaaacagatcgttat
tatggaattgaggcttgtaatgaagtgttggatggtcatggttatgagattgggtcaact
ctgatgcaggagtgtttgtgtatacgcgcttccttgttactcaagagacggtggaaaaat
gattcacacatggctattagagactgtcatagagctctaaatataaatccttcttcaact
agggcactcatttgcatggctgaagcactgtccatgttggaaaaacataaggaagcatta
gagtttgcttttgcagctcaaacttcagctccatctgattttgaaatcatggagagggtg
gagcatatcaagaagagttcggctgtagctgaagctgaaaaaactagcatagaaagtgac
agaagatcaagggcaaattaccgagctagaagagtgctttccctaagtgacataatctac
catacagaaggagagaatgatgctccgagtggacatgaaagagaagactctgattatgac
gatgagcttgaactggattttgaaacattaatacctgctgaaggagggcatgacgttgag
tccaatgttctcccgagaaacttaaatttgagaattcacaggagaggtgatttgaatttg
gaacctgggagcgtgactggctcttgtgggttacctgtattgtcatgtgaaaatgacaaa
gtgccataccggcctgagatggcgatagatatgaagcagagatatgttggccactgtaat
acaggcactgacataaaacaagccagttttattggccaaagaggtgaatatgttgctagc
ggaagtgatgatggtagatggtttatatgggaaaagaaaactgggcgattactaaagatg
ctgcatggagatgatgctgttgtcaattgtatacagtgccatccatatgattgtgttatt
gcaactagtggaattgatagcactataaagatctggactccaaattctcgagtcccttcc
aatgttgctggggaagaaggacccgagccttcaaatgtgttagaagccatggaagagaat
cagcgcagattatattgcagtcgtgaagccattttgccctttgaaattctggagcgtttc
cgaatgcacgattttgctgaaggaagttttcatccatttgagtgcacgcagagctga
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