Salvia miltiorrhiza (redroot sage): 130994818
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Entry
130994818 CDS
T09291
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB1
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03022
Basal transcription factors
smil03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
130994818
09124 Replication and repair
03420 Nucleotide excision repair
130994818
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smil03021
]
130994818
03400 DNA repair and recombination proteins [BR:
smil03400
]
130994818
Enzymes [BR:
smil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
130994818
Transcription machinery [BR:
smil03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
130994818
DNA repair and recombination proteins [BR:
smil03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
130994818
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
130994818
NCBI-ProteinID:
XP_057775871
LinkDB
All DBs
Position
7:53820587..53828179
Genome browser
AA seq
765 aa
AA seq
DB search
MGNGDKNRPSKRIKFSKDEHRASTAEDYSSHFGEDLEDDPRDGEGKKRDFSKLELKPDHM
NRPLWACADGRIFLETFSSLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLE
TETIISVLNKLSKTKLPKEMIDFIHNSTANYGKVKLVLKKNKYFVESPFPEVLKTLLKDD
VIGRARISSEGSRGADGFTVGKSAGEIEGTHEELLNEAELAAAAEEKETHAFEIDPTQVE
NVKQRCLPNALNYPMLEEYDFRNDPVNPDLEVELKPHAQPRPYQEKSLSKMFGNGRARSG
IIVLPCGAGKSLVGVSAACRIRKSCLCLATNAVSVDQWAFQFKLWSTIKEEQICRFTSDS
KERFRGNAGVVVTTYNMIAFGGKRSEEAEKIIEEIRNREWGLLLMDEVHVVPAQMFRKVI
ALTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMT
KEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAM
KLRKPMIYGATSHPERTKILEAFKTSRDVNTIFLSKVGDNSIDIPEANVIIQISSHAGSR
RQEAQRLGRILRAKGKPQDRVAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSF
KVITSLPPADTGAELSYHRLDDQLALLGKVLSAGDNEVGLEQLEEDADDIALQKARRSAG
SMSAMSGANGRVYMEYSTGKKLHGQMKSKPKDPAKRHHLFKKRFG
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgggaaacggtgacaaaaatcggcccagcaaaaggatcaagttctcaaaggatgaacat
agggcttcgactgcagaagactatagttctcacttcggagaagatttggaggatgatcct
cgtgatggtgaggggaaaaagagggatttctcgaaattggaactcaaacctgatcacatg
aatcggcccttatgggcttgtgccgatggtcggattttccttgaaactttctcctcatta
tacaaacaggcgtatgatttcctcattgcgattgctgaacctgtttgcaggccagagtcg
atgcacgagtacaacttgactccacattctttatatgcagcagtgtcggtgggacttgag
acagaaaccatcatatctgtcttgaataaactatcaaaaaccaagcttccaaaagaaatg
attgacttcattcataattctactgctaattatggcaaagtgaagctggtcctgaagaag
aataaatactttgtcgaatccccatttccagaggtgttaaagacattgcttaaagacgac
gttataggacgagctaggatttcctctgagggatcacgtggtgctgatgggtttacagtt
ggaaaatctgctggtgaaatagaaggtactcatgaagagttgcttaatgaagctgagttg
gcagctgcagctgaagaaaaagaaactcatgcatttgaaattgaccctactcaggttgaa
aatgtaaagcaacgatgtttacccaatgctttaaattatccaatgttggaggaatatgac
ttcagaaatgatccggtcaaccctgatcttgaggtggagttgaagccccatgcgcaacca
cgtccttatcaagaaaagagtcttagcaagatgtttggaaatggcagggcccgttctggt
attattgtgctaccttgtggtgcggggaaatctttagttggtgtatctgcagcttgccga
ataagaaagagttgtctttgtttggctacaaatgcggtgtctgtggatcaatgggctttc
cagttcaagctgtggtcaaccatcaaagaagaacaaatatgtcgtttcacatctgacagc
aaagaaagattccgcggcaatgctggggtggtggtgacaacatacaatatgattgcattt
ggtggaaaacgttctgaagaagcagaaaaaataattgaggaaataaggaaccgagagtgg
ggattgcttctcatggacgaggtgcacgtggttcctgctcaaatgttcaggaaggtcatt
gctctaactaaatctcactgcaaactcgggctcactgccactcttgtgagagaggacgaa
aggattacagatttgaacttcctaattggtccaaagttgtatgaggcgaattggttggac
cttgtgaaaggaggatttatcgcaaatgttcagtgtgcagaagtttggtgtccaatgaca
aaggagttttttgccgagtacttgaagaaagaaaattcaaagaaaaaacaggctctttat
gtgatgaaccccaataagttccgggcttgtgagttccttatccggttccacgaacagcag
cgtggtgataaaattatagtatttgcagacaatctttttgcgctgacagaatatgcaatg
aagcttagaaaacctatgatttatggtgccaccagccatcctgaaagaacaaaaattctt
gaagcattcaaaaccagtcgagatgtgaataccatttttctctcgaaggtcggtgataat
tctatagatattcccgaggctaatgtgataatccaaatttcatcacatgctggttcaagg
cgtcaagaagctcaacgacttgggcgtattctcagggccaaggggaagcctcaggacagg
gtggcaggaggcaaggaagagtacaatgcatttttctactctcttgtatctacagacact
caggagatgtattattcaacaaaaaggcagcagtttttgatcgatcaaggttatagtttt
aaggtgatcacaagcttgcctcctgctgatacaggcgccgagttgagctaccaccgtctt
gatgaccagcttgcacttcttggaaaggtgctaagtgcaggtgacaatgaagttgggctg
gagcaactagaagaagatgcagatgacatcgctcttcaaaaagcccgtcgttcagctgga
tccatgagtgcaatgtctggagccaacggaagggtatacatggaatatagtaccggtaaa
aagctacacggccagatgaagagcaagcctaaggatccggctaagaggcatcatttattc
aagaaacggtttggctga
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