Salvia miltiorrhiza (redroot sage): 130995253
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Entry
130995253 CDS
T09291
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03013
Nucleocytoplasmic transport
smil03015
mRNA surveillance pathway
smil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130995253
09122 Translation
03013 Nucleocytoplasmic transport
130995253
03015 mRNA surveillance pathway
130995253
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smil03019
]
130995253
03041 Spliceosome [BR:
smil03041
]
130995253
Enzymes [BR:
smil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130995253
Messenger RNA biogenesis [BR:
smil03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
130995253
Spliceosome [BR:
smil03041
]
Complex C
Other components
EJC/TREX
130995253
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
130995253
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
130995253
NCBI-ProteinID:
XP_057776451
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All DBs
Position
7:complement(59798099..59803008)
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AA seq
428 aa
AA seq
DB search
MGDTKENEAYEEELLDYEEEDEKAPDSVNAKVNGESVKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICHEFERFSTYLSDIKVAVFYGGVNVKIHKDLLKNECPHIVVGTPGRILG
LARDKDLSLRNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVT
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DVSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagacacgaaagagaacgaagcttacgaagaggaactcctcgactacgaggaggaa
gacgaaaaagcccccgattcggtcaacgccaaagtcaacggagagtccgttaagaaaggc
tatgtggggatccacagttcaggattcagagacttcctcttgaagccagagcttttgagg
gctattgtagattcaggatttgaacatccttcagaagttcaacacgagtgcatacctcaa
gccattttgggaatggatgtcatctgccaagccaagtctggtatggggaaaactgctgtc
tttgttctttcaacattgcagcagattgaacccgttgcaggtcaagttgcagctcttgtg
ctatgccatacaagggaactggcttatcagatctgtcatgaatttgagcgattcagcaca
tatttgtcagatattaaagtagctgttttctatggtggcgtcaacgttaagatccacaaa
gatctcctgaagaatgaatgccctcacattgtggtaggaacaccaggaaggattcttggt
ctagcaagagacaaggacctttctttaaggaatgtgaggcatttcatacttgatgaatgt
gacaagatgcttgagtctcttgatatgagaagagatgtgcaggagattttcaaaatgaca
cctcatgataagcaagttatgatgttttcggctacactcagtaaagagattcgacctgtt
tgcaagaaattcatgcaagatcctatggagatttacgtggatgatgaggcaaagttgacc
cttcatggtcttgtacagcactacatcaaattgagtgagctggagaagaaccgaaagctg
aacgatctgctcgatgcattggacttcaatcaagttgttatctttgtcaaaagtgtgact
agagctgctgagctgaacaagttgcttgtggagtgtaacttcccatcgatttgcattcac
tctggcatgtcccaagaagaaagattgacccgctacaagggattcaaggaggggcataag
aggattctcgtagcaactgatttggtaggaagaggaattgatatagagcgagttaatatt
gtgattaactatgatatgccagattctgcagacacttatctccacagggtgggtagagct
gggaggtttggcaccaaagggctggccatcacgtttgtttcttctgcctctgattcagat
gttctaaatcaggtacaggagaggtttgaagttgatattaaagaactacctgagcagatt
gatgtttccacatatatgccatcgtag
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