Salvia miltiorrhiza (redroot sage): 130995331
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Entry
130995331 CDS
T09291
Name
(RefSeq) WD repeat-containing protein ATCSA-1-like
KO
K10570
DNA excision repair protein ERCC-8
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03420
Nucleotide excision repair
smil04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
130995331
09124 Replication and repair
03420 Nucleotide excision repair
130995331
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smil04121
]
130995331
03400 DNA repair and recombination proteins [BR:
smil03400
]
130995331
Ubiquitin system [BR:
smil04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
130995331
DNA repair and recombination proteins [BR:
smil03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
130995331
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40_CDC20-Fz
WD40
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
Beta-prop_WDR90_POC16_2nd
EIF3I
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_SPT8
WD40_RFWD3
WDR90_beta-prop_4th
Beta-prop_Nup120_160
Beta-prop_IFT140_1st
Beta-prop_SCAP
WD_LRWD1
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_LRRK2
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
130995331
NCBI-ProteinID:
XP_057776561
LinkDB
All DBs
Position
7:13652581..13658323
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AA seq
450 aa
AA seq
DB search
MWKETREREFGNLRPNLFSSRIFKSRISSIQLSNSKEFVSAHRGSVNSLQVDLTEGRYLL
AGASDATVAVYDVQRATDHEGRGRISKHKSLFVINKQHEHGHKYAISSAIWYPIDTGLFV
TGSYDHHINVWDTNTQQVVMNFKMPGKVYRNAMSSIARSHMLIAAGTEDVQVRLCDMASG
AFAHTLSGHRDGVMSMEWSTSSEWVLVTGGCDGAIRFWDIRRAGCFRVLDQSHSQLGRRP
PLLACATTNKKSSIYQSSAKARPPQRKSTNGNTLKPHGVGRVPSQMKSTKQRSHPGMLSS
HDRATAHYGVVTGLKVTEDGMYLLSAGSDSRLRLWDIESGCNTLVNFETARLQSSKAIQM
AVSQDSALSFVPCMTTVKVFDIWSGQTKCAFRGHYENVNCCWYNAQDQELYTGGNDRQIL
VWSPPKSISNEEDELKNGEAATSDQDNWSD
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgtggaaggagactagagagagagagttcgggaaccttcgccctaatttgttcagcagt
cgcattttcaaatctaggatttcgtccattcagctctccaattccaaggaattcgtctcc
gctcatcgcggctcagtcaactcacttcaggttgatttgacagagggtcgatatctactg
gctggtgcatcagatgcaactgttgcggtttatgatgttcagcgagcaacagatcatgag
ggccgtggccgaatttcaaagcacaagtcgttgtttgtcatcaacaagcagcatgagcat
gggcataaatatgccatatcctctgccatctggtatccaattgacacagggttgtttgtt
actggttcttatgaccatcatatcaatgtttgggatactaatactcaacaagttgtaatg
aattttaaaatgccaggaaaggtttatagaaatgctatgtcttcaatagcaagatctcac
atgttaattgctgctggaactgaagatgttcaagttcgattgtgtgatatggcttctggt
gcatttgctcacactttgtctggtcatcgtgatggagtaatgtcgatggagtggtccact
tctagtgagtgggtattggtcactggaggatgtgatggtgcaatacgtttttgggacatc
agacgggctgggtgttttcgtgttttggaccaatcacattcccagctcggaagacgtcca
cctctccttgcgtgtgcaacaacaaataagaaatcatcaatatatcagagttctgcaaaa
gcccgaccacctcaaagaaaatcaactaatggcaacactttaaagccccatggtgtcggt
agggttcctagtcaaatgaaaagtacaaagcagagatcacatcctggaatgctgtctagc
catgatcgtgccactgcccattatggtgtagtaactggattaaaggtgactgaagatggc
atgtatctcctaagtgcaggttctgattcaaggttgagattgtgggatatagagtctggc
tgcaatacacttgtgaactttgaaactgcacgcttacaaagtagcaaggccatacagatg
gctgtatcccaagattcagctctttcttttgttccttgcatgaccactgtgaaagtcttt
gatatttggtctggccaaacaaagtgcgcgtttcgcggccactatgaaaatgtcaactgc
tgctggtataatgcacaagatcaggagttgtatactggtggtaatgataggcaaattctt
gtctggtctccacccaaatccatttccaatgaggaggatgaattgaagaatggagaggct
gcaaccagtgaccaggataactggagtgattaa
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