Salvia miltiorrhiza (redroot sage): 130995903
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Entry
130995903 CDS
T09291
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130995903
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smil03041
]
130995903
Enzymes [BR:
smil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130995903
Spliceosome [BR:
smil03041
]
Complex C
Other components
Step II factors
130995903
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HA2_C
HA2_N
AAA_22
DEAD
AAA_19
nSTAND3
PhoH
ABC_tran
T2SSE
AAA_30
TsaE
ATPase
SLFN-g3_helicase
AAA_29
Motif
Other DBs
NCBI-GeneID:
130995903
NCBI-ProteinID:
XP_057777374
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All DBs
Position
7:29467073..29472989
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AA seq
584 aa
AA seq
DB search
MPSMASNKPNHTAQINHINSPKPDFIARRQKIEKHRKALPIAAVEKRLVEEVRNNDVLII
VGETGSGKTTQLPQYLFNGGFCRNGGVIGITQPRRLAAVTVAKRVAEECGVTLGQKVGYA
IRFDDVTSPSTMIKYLTDGLLLREALLDPFLSKYSVIIVDEAHERTVHTDVLLGLLKTVQ
KTRSHVHNQLIKAENGIQLEKENEVLKHNQGKKLSPLKLIIMSASLDAKIFSDYFGSARA
MHVQGRQYPVDVLYTHQPETDYVDATLITIFQIHLEEGPGDILVFLTGQEEIESIERLIQ
ERLPRLPESKCKLLVFPIFASLPSEKQMKVFMPPPSGFRKWPCWLRWTGKCYRLYPENEF
YKLKASTTPEIKRCNLANVILQLKTLGVDDILGFDFIEEPGRMAIIKSLELLFLLGALTD
GSKLSDPVGHQLARLPLDPIYSKALVVANQFNCLEEMLIIVALLSVESIYYAPREKLEES
RTALRSFSSLEGDHLTLLKIYRASDEFLENSKLVGSSDKAEKKLRKWCKQNFINSRSLKH
ARDIHSQIQRNVQQMGLGVTSCGDDMLPLRRCSLTVLTGVCLVV
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcaatggcctccaacaaacctaatcacactgcccaaatcaatcatatcaatagc
cctaaacccgacttcatcgccaggaggcaaaaaatcgagaagcacaggaaagctctgcca
attgctgcggtcgaaaagagactagtggaggaggttcgcaataacgacgtactaattatt
gttggggaaaccggcagtgggaagacaacacagttaccacaatatctatttaatggaggg
ttttgccgcaatggtggagtcattgggataactcaacctagacgtcttgctgctgttaca
gtcgctaaaagggttgccgaggaatgtggagtaacattaggccaaaaggttggatatgcc
attagatttgatgatgtgacttctccctcaacaatgattaaatacctgacggatggcttg
ttattgagggaagcattattggatccatttctctctaaatattcagttattattgtggat
gaggctcatgagagaacagttcacactgatgtattacttggtctattgaagactgttcaa
aaaacaaggtcgcatgtacataatcaacttataaaagctgagaatggcatacagttggaa
aaagagaatgaggttctgaagcacaatcaaggcaaaaagttatccccattgaagttaatt
attatgtctgccagtctggatgcaaaaatcttttccgattattttggtagtgctagagct
atgcatgtccaaggccgacaatatcctgttgatgtactatacactcatcaaccagagact
gattacgtagatgcaaccttgattactatatttcagatacatctagaggaaggaccaggc
gatatacttgtgttcttaactggccaagaagagattgaatccattgaaaggctcatccag
gagcgtcttcctagattacctgagagtaaatgcaagctcctggtatttccgatatttgca
tctcttccatcagagaaacaaatgaaagtcttcatgcctccaccaagtggttttcgtaag
tggccgtgctggctgagatggaccgggaaatgctaccgcctttatccggagaatgaattt
tacaaactgaaagcttctacaacacctgaaatcaaaaggtgcaaccttgcaaatgtaatt
ttgcagcttaaaactctaggtgttgatgatattcttggcttcgacttcattgaagaacca
ggcaggatggccatcatcaagtcactggagttgttattcttgttaggtgcccttacggat
ggaagtaaattgtccgatccagttggtcatcaactggccaggcttccactggatccgatc
tattctaaggctcttgttgttgccaatcaatttaattgcttggaggagatgttaataatt
gttgcattgctctcagtcgaatccatatattatgctccccgtgaaaaattggaagagtct
cgaactgccttgagaagcttttcaagtttagagggcgaccatttgacgttactaaagata
tatcgtgcttctgatgagtttttggagaatagcaagctggtaggtagttctgataaggct
gaaaagaaactcagaaaatggtgcaagcagaattttatcaacagccgctctttaaaacat
gcccgtgatatccatagtcaaatacagaggaatgttcagcaaatgggtcttggtgtgact
tcatgtggggatgacatgcttccactgcgcagatgcagcctgacggtacttacaggggtt
tgtctagtggtctga
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