Salvia miltiorrhiza (redroot sage): 130997542
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Entry
130997542 CDS
T09291
Name
(RefSeq) protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130997542
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smil03019
]
130997542
Messenger RNA biogenesis [BR:
smil03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
130997542
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
HXXSHH
Motif
Other DBs
NCBI-GeneID:
130997542
NCBI-ProteinID:
XP_057778864
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All DBs
Position
8:29404328..29412621
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AA seq
896 aa
AA seq
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MEIDHPEGETARKSDALRNLSSKGALPTSVAKLSGSSRIIPTQTDFHFYDNFEEFKNPVS
EIDDKSKTLLRNIGASENLLGKPILLPDDKNVELDEDLAFDWLVNVNDEMYERFDVSLDD
FKRLRKKEEESGVRTMRVDDEGEENGFQMVYGKKNKKLSERNVEGVAKGAQEVKVAAKVK
PKVPFHIPSIPRPQDEYKIIVNNSNQPHDHVWLQRSDDGSRFLHPLEKLSVLDFVDTSES
TVEPEKPLPLEVTPFKLVEEVKDLKQLAIKLRSVNEFAVDLEHNQYRSFQGLTCLMQIST
RTEDFVIDTLKLRIHIGPYLRELFKDPTKRKVMHGADRDIHWLQRDFGIYVCNMFDTGQA
SRVLKMERYSLEHLLNHFCGVQANKQYQNADWRIRPLPVEMIKYAREDTHYLLYIYDLMR
TRLLRSSAESESSDPPLIEVYKRSYEICTQLYEKELLTDTSYLYIYGLQDADLTAQQLAV
VSGLCEWRDIVARAEDESTGYVLPNRTLIELAKQMPLTANQLRRALKAKHPYIERNLGSV
VSIIRHSIQNAASFEEACKYLKERRTELSHEARTLVPEESEVLPSEAPEISKVDEEIECV
RNSSLPSVPAVESSKVKIADNRPEISHSSPRKKVNETSPARGDSKYAHTTTNPSHSAEAT
VEMQKKPSRAFGALFGNSAKRKFNPDKREKEDSKLEQIKSTVSLPFHAFSGGDERLHLEV
ESAKIPEVVHEEDPPAPAADSTLVDIIVLDDSDIEDSEEGNLDAARDDQSRQVENNEAGS
TLEGDEPISLSDLSSSFQKCFPSLGQAMGSKGVDKSRPSEGTLDVIPFDYEAARKEVIFG
GQKKVESTVEGDSSSKRKERRKGSTAVGKDDEPAEHPQGRRRQAFPASGNRTASYR
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atggaaattgatcaccccgaaggcgaaaccgcaagaaaatccgacgccctacgaaatctc
tcgtcgaagggcgcgttgcccacttctgtggcgaagctttcaggctcgtcgcgcatcata
ccgacacaaacggacttccatttctacgataactttgaggaattcaagaaccccgtctcg
gaaatcgacgacaagtccaagacccttctgagaaatatcggggcgtcggagaatttactc
gggaagccaatcctgttgccggatgacaaaaacgttgaattggatgaggacttggcgttt
gattggctggtgaatgtgaacgacgagatgtacgagaggtttgatgtttcgttggatgac
ttcaagaggctgcggaagaaggaagaggagagtggtgtgagaaccatgagagtagacgac
gaaggtgaggaaaatgggtttcagatggtttatgggaagaaaaataagaaactttcggag
aggaatgtggagggggtggcgaaaggggctcaagaagtgaaggtggccgccaaagtgaag
cccaaggttcctttccatataccttctataccgcggccgcaggacgagtataagataatc
gtgaataactcgaatcagccacacgaccatgtctggttgcagaggagcgatgatgggtct
cggttcttgcatcctttggagaaactctctgttcttgactttgttgatacgagtgagagt
acggttgaaccagaaaaacctcttcccttagaagtcacaccctttaagcttgtggaagaa
gtgaaagatttgaagcagttagccataaaattacgtagtgtgaatgaatttgcggttgat
ttggaacacaaccaatacaggtcttttcaaggtttaacatgcttaatgcaaatatccaca
agaactgaggattttgttatagatactctgaaacttcgtattcacattggtccatatctc
agagagttattcaaagacccaactaagagaaaggtaatgcatggagcggatcgcgatatc
cattggcttcagcgagactttggcatttatgtctgcaatatgtttgacacaggacaggcg
tccagggtattgaaaatggaaagatacagcctggaacacctgttgaatcatttttgtgga
gttcaagcaaacaaacaataccagaatgcagattggcggatcagaccacttcccgtcgag
atgatcaaatatgccagagaagatacacattatttgttgtacatatatgatcttatgagg
acaaggttactaagatcatctgctgaatctgaaagttctgatcctcctcttatcgaggtc
tacaaacggagttatgaaatttgcactcaactttatgagaaagaacttctgacagatact
tcttacctttacatttatgggttgcaggatgctgatctcaccgctcaacagctagcagtt
gtttctggactttgtgaatggagggatattgttgctcgtgcagaagatgagagcactggt
tatgttttgccaaatagaactcttatcgaacttgctaaacagatgcctctcacggcaaac
caattgcgtcgggctttgaaggccaagcatccatatattgagcgaaatcttggctcagtt
gttagtattatacgtcactctatccaaaatgctgcttcattcgaggaggcttgtaaatat
cttaaggaaaggcgtacagaattgtcgcatgaagccagaactttggtcccagaagaatcc
gaagttttgccttctgaagcacctgaaatatcaaaagttgacgaggaaatcgaatgtgta
cgaaatagcagtttacctagtgttcctgcagttgagagttctaaggttaaaattgctgat
aacagaccagagatttcccattcctctcctaggaagaaagtgaatgaaacatctcctgca
cgtggggactccaaatatgcacatactaccacgaatccatcgcattcagctgaagcaacg
gttgagatgcaaaagaagccatcccgtgcctttggggcattgtttggaaattcagccaaa
aggaagttcaatcctgataaaagagagaaagaagactccaaactagagcagataaaatca
acagtgagtctccctttccacgcattttcaggcggagatgaaagattgcatttggaagtt
gagtctgcgaagattccagaagttgtacatgaagaagaccctccagctcctgcagctgat
tcaactttagtagatattattgttttggatgattcagacattgaggattccgaagagggt
aacttggacgcggccagagacgatcagtcgagacaagtcgaaaacaatgaagccggatcc
accttggaaggagatgaacccatatcactatctgatctctcctccagcttccagaaatgc
tttccatcactaggtcaagctatgggttcaaaaggggtggacaaatctcgaccatcggaa
ggcaccttagatgtgataccttttgactatgaagctgctcgaaaagaggtcatatttgga
ggccagaagaaggtggaatccacggtggaaggcgacagcagttcaaagagaaaagaaagg
agaaaaggttctactgctgtaggcaaggacgacgagccagcagaacacccacagggtaga
cggcgtcaggcttttccagcatccggaaatcgcacagcaagttatcgctga
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