Salvia miltiorrhiza (redroot sage): 130998352
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Entry
130998352 CDS
T09291
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03015
mRNA surveillance pathway
smil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130998352
09123 Folding, sorting and degradation
03018 RNA degradation
130998352
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smil03019
]
130998352
03041 Spliceosome [BR:
smil03041
]
130998352
Messenger RNA biogenesis [BR:
smil03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
130998352
mRNA cycle factors
Stress granule specific factors
130998352
Spliceosome [BR:
smil03041
]
Complex C
Other components
Complex C specific factors
130998352
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_7
RRM_RdRP1_2
RRM_3
RRM_Nup35
RRM_MARF1
YflT
SET_assoc
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
130998352
NCBI-ProteinID:
XP_057779761
LinkDB
All DBs
Position
1:58127819..58132541
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AA seq
649 aa
AA seq
DB search
MAQIQVQHQNVAAPAPNGVAVAPGGASAGQFQTTSLYVGDLDFNVTDSQLYDLFNQVGQV
VSVRVCRDLSTRRSLGYGYVNYSNPQDAARAMELLNFTPLNNKSIRVMYSHRDPSVRKSG
MANIFIKNLDKTIDNKALHDTFSSFGNILSCKIATDPNGQSKGYGFVQFDSEEAAQSAID
KLNGMLINDKQVYVGHFLRKQERDTTQGNAKFNNVFVKNLAESTTDDDLKTTFGEYGIIT
SAVVMRDADGKSRCFGFVNFEHADDAAKAVEALNGKKFEDKEWYVGKAQKKSEREQELKS
RFEQTTRETVDKFPGVNLYVKNLDDSIDDDKLRELFSGFGTITSCKVMRDPSGISRGSGF
VAFSTPEEASRALAEMNGKMLISKPLYVALAQRKEERRAKLQAQFLQMRPVAMPPSMAPR
MPMYPPGAPGIGQQLFYGQAPAIIPPQAGFGYQQQLVPGMRPGGAPMPNFFVPLVQQGQQ
GQRPGGRRGGPGQQNQQPVPMMQQQMLPRGGRVYRYPPGRNVPDVPMPGVAGGMVSVPYD
MGGMLPRDPQPMPITALASALANATPEQQRTMLGENLYPLVDQLEHEHAAKVTGMLLEMD
QTEVLHLLESPDALKSKVSEAMDVLRNVQQSGSPADQLASLSLNDNLVS
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagattcaggtgcagcaccagaatgtggcggcgccggctcccaatggagtggcg
gtggcgcctggtggggcttctgcaggacagtttcagacgacctctctgtatgtcggtgac
ttggatttcaacgtaacggactcgcagctctacgatctgttcaatcaggttgggcaggtt
gtgtctgttagggtttgtcgcgaccttagcactcgccgcagccttggctatggttatgtc
aattatagcaacccccaggacgctgcaagagctatggaattgttgaacttcactcccctc
aataacaagtcgatccgagtcatgtattctcatcgggacccaagtgttagaaaaagtgga
atggcaaatatctttatcaagaatttggacaaaacaattgataacaaagctctgcacgac
actttctctagctttggaaacatcctttcgtgtaagatagcaactgatcctaacggtcaa
tctaagggttatggatttgtgcaatttgattctgaagaagctgcacaaagtgctatagat
aagttaaatggtatgctcataaatgataagcaagtctatgttgggcatttcctccgtaag
caagagagggatacgacgcagggcaatgctaagttcaacaatgtgtttgtgaaaaatcta
gccgagtctactacagatgatgatctaaaaacaacttttggcgaatatgggataatcact
agtgctgtagtgatgagggatgctgatggaaagtcgagatgctttggatttgtcaatttt
gagcatgctgatgatgctgctaaagctgttgaagctctaaatggaaagaaatttgaggac
aaggaatggtatgttgggaaagcccagaagaagtcggagagagagcaggaacttaaaagt
cggtttgagcaaactaccagggaaactgttgacaaatttccaggagttaacttatatgtt
aaaaacttagatgatagcattgatgatgacaaactgagagaattattttcaggttttggt
accatcacctcttgtaaggttatgcgagaccctagtggaataagcagaggatctggattt
gttgccttttcaactccggaagaagcttcccgagctcttgctgaaatgaatgggaaaatg
ttaattagcaagcctctttacgttgccttggcacagcgcaaggaagagaggagagccaag
ttacaggcccaatttttgcaaatgaggcctgttgcaatgccaccttctatggctccacgt
atgcccatgtatccccctggtgcacctggtattgggcagcagctattttatgggcaagcc
cctgccatcattcctcctcaggctggctttggttatcagcagcagcttgttcctggaatg
cgccccgggggtgctcccatgccaaatttctttgtgccgctagtccaacagggtcagcag
ggccaacgaccaggtggcagacgaggaggtccaggacagcaaaatcagcaacctgtcccg
atgatgcaacagcagatgctaccaaggggggggagggtgtataggtatcctcctggtcgt
aatgtgccagatgtgcccatgcctggtgttgctggaggaatggtttctgttccgtatgac
atgggtggcatgcttcctcgagatccccagcctatgccaattactgctttggcttctgcc
cttgctaatgcaacacctgaacaacagagaactatgttgggtgagaacttgtaccctctt
gttgatcaactggagcatgagcatgctgcgaaggtcacaggcatgcttctggagatggac
cagaccgaggttcttcatttgcttgagtcacctgatgctttgaaatcaaaggtttccgag
gcaatggatgtcctgaggaatgttcagcagtctggcagccccgccgaccaacttgcttcg
ctgtcactcaacgacaaccttgtttcttga
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