Salvia miltiorrhiza (redroot sage): 130999025
Help
Entry
130999025 CDS
T09291
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130999025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smil03041
]
130999025
Enzymes [BR:
smil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130999025
Spliceosome [BR:
smil03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
130999025
Complex C
U5 SnRNP specific factors
130999025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
DEXQc_Suv3
T2SSE
Motif
Other DBs
NCBI-GeneID:
130999025
NCBI-ProteinID:
XP_057780481
LinkDB
All DBs
Position
8:52647770..52656320
Genome browser
AA seq
2172 aa
AA seq
DB search
MAHPGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPKSFGDRAY
RDKPPELEEKLKKSKKKKEREPALDAAPPRSKKRRLQEESVLTSSDEGVYQPKTKETRAA
YEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNETIKNPEKKKEIEKLLNPITSTTFDNL
VSLGKRITDYHDGGDAGDTAVNRDDGLDDDVGVAVEFEENEEEEEESDLDMVPEDEEDDD
DVTEVDGSGAMQMGGIDDDEEQEAMEGMTLNVQDIDAYWLQRQITQAYDQKIDPQQSQKL
AEEVLKILAEGDDREVETKLLVHLQFDKFSLIKFLLRNRLKVVWCTRLARAEDQEKRKEI
EEEMIGLGSDLAAILEQLHATRATAKERQKNLEKSIREEARRLKDETGGDGGRERRDLVD
RDADGGWLKGQRQLLDLDNLAFQQGGLLMANKKCELPVGSYRNHKKGYEEVHVPALKPKP
LADNEKLVKISDLPDWAQPAFRGMSQLNRVQSKVYDSALFTPENILLCAPTGAGKTNVAM
LTILQQIGLNRNNDGSYNHSNYKIVYVAPMKALVAEVVGNLSNRLEPYGVKVRELSGDQS
LTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIIAR
TVRQIETTKEHIRLVGLSATLPNYEDVAIFLRVKLDKGLFHFDNSYRPVPLAQQYVGITV
KKPLQRFQLMNDVCYEKVISVAGKHQVLIFVHSRKETTKTARAIRDTALANDTLSKFLKE
DSASREILQSHTELVKSSDLKDLLPYGFAIHNAGMVRADRQIVEELFADGHVQVLVSTAT
LAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDTYGEGIIITGHS
ELQYYLSLMNQQLPIESQFISKLADQLNAEIVLGSVQNAREACKWLSYTYLFVRMVRNPT
LYGLAPDVLKTDETLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYYYIT
HGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVSVRQDEKMELVKLLERVPIPIKESLEE
PSAKINVLLQAYISQLKLEGLSLTSDMVYITQSAGRLMRALFEIVVKRGWAQLAEKALKL
CKMIGKRMWSVQTPLRQFHGIPNEILMKLEKKDLSWERYYDLSSQEIGELARFPKMGRTL
HRCIHQFPKLNMVAHVQPITRSVLKVELTITPDFQWDDKVHGYVEPFWIIVEDNDGEHIL
HHEYFMLKKQYVDEDHTLNFTVPIYEPLPPQYFISVVSDRWLGSQTVLPISFRHLILPEK
YPPPTELLDLQPLPVTALRNPAYESLYQQFKHFNPVQTQVFTVLYNSDDNVLVAAPTGSG
KTICAEFAILRNHQKGPESTMRAVYIAPIEALAKERYQDWKKKFGEGLGMKVVELTGETA
TDLKLLEKGQIIISTPEKWDALSRRWKQRKHVQQVSVFIIDELHLIGGQGGPILEVIVSR
MRYIASQLENKIRIVALSSSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIA
NFEARMQAMTKPTYTAIVQHAKNGKPAIVFVPTRKHARMTAVDLMTYSSVDSEQKPLFLL
QSSEELAPFVANIKEPMLKETIQFGVGYLHEGLSSTDQDIVKTLFETGCIQVCVMSSTMC
WGVPLSAHLVVVMGTQYYDGRENAHSDYPVTDLLQMMGHASRPLVDNSGKCVILCHAPRK
EYYKKFLYEAFPVESHLHHYLHDNLNAEVVVGVIQNKQDAVDYLTWTFIYRRLTQNPNYY
NLQGVSHRHLSDHLSELVESTISDLEASKCVEVEDDYLLAPANLGLIASYYYISYTTIER
FSSSLTSKTKMKGLLEILASASEYEQLPIRPGEEELIRRLIHHQRFSFENPKYTDPNVKA
NALLQAHFSRQTIGGDLSSDQQEVLIYASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQ
GMWERDSMLLQLPHFTKELAKRCQENPGKNIETIFDLLEMEDDERRELLKISDTQLMDIA
RFCNRFPNIDLTYDVLNSENVTSGEKVYVQVSLERDLEGRTEVGPVDAPRYPKSKEEGWW
LVVGDTKTNQLLAIKRVTFQRKSRVKLDFDAPTEPGKKTYTLYYMCDSYLGCDQEYSFTV
DVKEAGTLEEDS
NT seq
6519 nt
NT seq
+upstream
nt +downstream
nt
atggctcatccaggtggcggagctgaagcgcatgctcggttcaagcagtatgagtacaga
gcaaactcgagtcttgttcttaccacggactctcgacctcgtgacacccatgagccaact
ggggagccagagtcattgtgggggaagattgaccctaaatccttcggtgacagggcatac
agggataaacctcctgagttggaggagaagcttaagaaatctaaaaagaagaaggagcgg
gagcctgctcttgatgctgctccaccgaggagcaagaagaggcgtcttcaggaggagagt
gtcctcacctcatcggatgaaggtgtttaccagcccaagacgaaggaaacaagagctgcc
tatgaagccatgctcagtgttattcagcaacaactgggtgggcagcccttgaacattgtt
agtggtgctgctgatgagattttggctgttctcaagaatgagaccatcaagaatcctgag
aagaaaaaggagattgagaagttgttgaaccccataactagcactacttttgataaccta
gtttcccttgggaaacgcattactgattaccatgatggtggcgacgctggtgatactgct
gttaatagagatgatggccttgatgatgatgttggtgttgctgtggagtttgaggaaaat
gaagaggaggaggaggagagtgatttggatatggtacccgaggatgaagaggatgacgat
gatgtaactgaagtagatggttctggggccatgcagatgggtgggattgatgatgatgag
gaacaggaagctatggagggaatgacattgaacgtgcaggatattgatgcatattggctt
cagaggcagatcacacaggcgtatgaccagaagattgatccgcaacagagtcagaaactc
gctgaagaggttcttaaaatccttgctgaaggtgacgatcgtgaagttgagacaaagctg
ttggtgcatctacagtttgataagtttagtcttatcaaatttttattgcgtaaccggttg
aaagtagtgtggtgcacccgcctggcaagggctgaagaccaagagaagagaaaggagatt
gaagaagaaatgataggtctagggtcagatcttgctgccatcctggagcagttgcatgcc
actagagcgactgccaaggagaggcaaaagaacttagagaaaagcattagggaggaggct
cgccgactcaaggacgaaactggtggagatggtggacgtgagcgtcgggatctggttgat
agagatgctgatggtggttggttaaagggacagcggcaacttcttgaccttgacaacctt
gcctttcaacaaggtggcttgctgatggccaacaaaaaatgtgagcttccagtgggttct
tatagaaatcataagaagggttatgaagaagttcatgtgccagctttgaagcccaagcca
ttggctgataacgaaaagcttgtgaagatatctgacctgcccgactgggcgcaaccagct
ttcagaggaatgagccagttgaacagggtacagagtaaggtttatgattctgcactattc
acaccagaaaatatcttgttatgtgctcctactggggctgggaaaacaaatgttgctatg
cttaccatacttcagcaaattggtctgaataggaataatgatgggtcttacaaccatagc
aattataagattgtgtatgtcgcacctatgaaggctctggtggccgaggttgtaggcaac
ctttctaatcgcctggagccatatggtgtcaaggttagagaactgagtggagatcagtca
ttgacgcgtcagcagattgaggaaactcaaattatagtgacgacccctgagaagtgggat
attattaccaggaaatcaggtgatcgtacttatacacagcttgtaaaactcctgattatt
gatgagatccatcttctgcatgataatagaggtcctgtgctcgaaagtataattgcaaga
actgttcgtcaaattgaaactactaaagagcacattcggcttgttggcttatctgctaca
cttccaaattatgaagatgttgctatatttttacgagttaaactagacaaggggctgttc
cactttgataatagctaccggcctgttcctttggctcagcagtatgtcgggattacagta
aagaaaccgttacaaagatttcaattgatgaatgatgtttgctatgagaaggtgatcagc
gtcgctggaaagcatcaggtgttgatctttgtgcactcaaggaaggagacaacaaaaact
gctcgcgcaattcgtgacacggcccttgctaatgatactctgagtaaattcttgaaggag
gatagtgcaagtcgtgaaattctccagtctcatacagagctggttaagagtagcgatctt
aaggacctattgccatatggttttgcaattcataatgctgggatggttagagctgatcgc
caaattgttgaagagcttttcgcagatgggcatgtgcaagtcttggtctctactgcaact
ctagcttggggtgttaatttacctgctcatactgttattatcaaaggtactcaaatctac
aatcctgaaaaaggagcatggactgagttgagtcctctagatgtcatgcagatgcttggc
cgtgctggaaggcctcaatatgacacttatggtgaaggaatcattataacagggcatagt
gagctgcaatattatctgtctttgatgaatcaacagctgcctattgaaagtcagtttatt
tcaaaattggctgatcagttaaatgcagagattgtccttggaagcgtacagaatgctaga
gaagcatgcaaatggctctcatacacttacctttttgttcgaatggtgcgtaatcctacc
ctttatggtttggcacccgatgttctgaagacagatgagaccttggaggaaaggagagct
gatctgattcattcagcagcaacaatactggacaagaataatcttgtgaagtatgacagg
aaaagtggatatttccaggtcacggacttgggtcgcattgctagctattactatataact
catgggactatttcaacgtacaatgagcatttgaagccaacaatgggtgatatcgaactt
tgtcgtctcttctcccttagtgaagagttcaagtacgtctctgtgagacaagatgagaag
atggagctggtcaagctattagagcgagtcccaataccaatcaaagagagtcttgaggaa
cctagtgccaaaattaatgttcttcttcaagcctatatttcacagttgaagcttgaagga
ctatcattgacatctgatatggtttatatcactcagagtgctgggcgtctgatgcgagcg
ctatttgagatagttgtaaaaaggggatgggcacaattggcagagaaggctctaaaactg
tgtaaaatgataggcaagagaatgtggagtgtgcagacaccacttcgtcaattccatggt
attccaaatgaaattttgatgaagttggaaaagaaagatttgtcctgggaaaggtactat
gatctctcttcacaggagatcggagaacttgcccgtttccctaaaatgggaagaacactt
catagatgtattcaccagttcccaaaactaaacatggttgcacatgttcaacccattact
cgctctgttttgaaggttgaactgacaattacgccggatttccagtgggatgacaaggtc
catggatatgttgagcctttctggattattgttgaggataatgatggggaacatattctt
catcacgaatatttcatgttgaagaagcagtatgtagatgaggatcacacgctgaatttc
accgttcctatatatgaaccactacctcctcagtatttcatcagtgttgtgtctgataga
tggctagggtcacagactgttctccccatttctttcaggcacctcattttgcctgagaaa
tatcctcctccaactgagttgcttgatttgcaacccctacccgttacagcattgaggaat
ccagcgtatgaatcgctatatcaacagttcaagcatttcaatcctgttcaaacccaggtc
ttcactgtcctgtataactcagatgacaatgtcttggttgctgcaccgactggtagtggg
aagaccatatgtgctgagtttgctattttgagaaatcatcaaaagggacctgaaagtacc
atgagggctgtctatattgctcctattgaagctctcgcaaaggaaaggtatcaggattgg
aagaagaaatttggagagggtcttggaatgaaggtagttgaattaactggggagactgca
acagacttgaaacttctcgagaaaggtcaaataatcataagcactcctgagaaatgggat
gctttatctcgccgatggaaacaaaggaagcatgttcagcaggttagtgtgttcattatt
gatgaacttcatttgattggaggtcaaggtgggcctatcctggaggtcatagtctctagg
atgaggtacattgctagtcagctggagaacaagattcgtattgttgccctgtcaagttct
cttgcaaatgccaaggatttgggagaatggattggcgctacatcccacggtcttttcaat
ttccctcctggtgttaggcctgtacctttggaaattcacatccaaggtgttgacattgct
aattttgaagcaaggatgcaagccatgacaaaacctacatacacagcaattgtgcagcat
gctaagaacggtaaacctgccattgtatttgttcctaccaggaagcatgcccgtatgact
gcggtggacttgatgacttattcaagtgtggatagtgaacaaaaacccttgttcttatta
cagtcttcagaagagttggctccctttgttgccaacataaaggaacctatgttgaaggag
actattcagtttggtgtgggttatttgcatgaaggcctaagcagtacagatcaggatata
gtaaagacattgtttgaaacaggttgcattcaagtctgtgtgatgagcagtacaatgtgt
tggggagtcccactgtctgctcatctggtagtggttatgggaacacagtactatgatggc
agagaaaatgctcatagtgattatccagtcactgatttactgcagatgatgggtcatgcc
agtcgaccgctagtagacaattctggaaaatgcgtcatcctctgtcatgccccacgcaaa
gaatattacaagaaattcctctatgaagctttcccggttgaaagccatttgcatcattat
ctgcatgataatctaaatgccgaggtggtggttggggtcatccaaaacaagcaggatgcc
gtggactacctgacttggacatttatctatagaaggctgactcagaacccaaactattac
aatcttcaaggtgtcagtcacaggcatctctcagatcacctgtccgagctcgtggagagc
accatcagtgatctagaagcgagtaaatgtgttgaagttgaggatgactatttactggcc
cctgcaaatcttggcctgattgcttcttattactatattagttacacaacaattgagcgc
ttcagttcctctctgacttctaaaacaaagatgaagggtctcttggaaatcttggcttca
gcctcagagtacgagcagcttccaataagacctggagaagaagagttgataagaaggtta
atacatcatcagcgcttctcctttgaaaatcccaagtacacggatccaaatgtcaaagca
aatgctctactgcaagctcatttctccaggcagacaattggtggagatttgtcttctgac
cagcaggaggtgcttatctatgcaagcaggcttcttcaggccatggttgatgtaatttcg
agcaatggctggctcagcctggcccttcttgccatggaagtaagtcagatggtaactcag
ggaatgtgggagcgcgattcaatgctcctccaacttcctcacttcaccaaggaattggct
aagaggtgccaggaaaatcctgggaaaaatattgagacaatcttcgatctgctggaaatg
gaggatgatgaaaggcgggagctattgaaaatctccgatacacagttgatggacattgct
cggttttgtaatcgctttcccaacattgatctgacctatgatgtgctgaacagtgagaat
gtcacaagtggggagaaagtttatgtacaagtcagcctcgaacgtgatcttgaaggaaga
acagaggttggacctgttgacgcccccagatatcctaaatcgaaagaagagggctggtgg
ctggtggttggtgataccaaaaccaatcagttgcttgctatcaaaagggtcactttccag
aggaagtccagggtgaaactcgactttgatgctcctacagaacccggaaaaaagacatac
acactatattatatgtgtgattcttatctaggttgtgatcaagagtatagcttcactgtg
gacgtcaaggaagcaggaacactggaagaggatagttag
DBGET
integrated database retrieval system
