Salvia miltiorrhiza (redroot sage): 130999427
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Entry
130999427 CDS
T09291
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130999427
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smil03019
]
130999427
Enzymes [BR:
smil01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
130999427
Messenger RNA biogenesis [BR:
smil03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
130999427
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
130999427
NCBI-ProteinID:
XP_057780932
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All DBs
Position
8:complement(57018696..57022268)
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AA seq
613 aa
AA seq
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MYLRRSLCTQSAAGHRRRRQLPVKQVIKSNFSETIAEFKDSIFSSDFVAVSLQKTGGYSA
PWQKLLPIDTEETAYLKAKRAAERFQVLQFSVCPFSVKASKLIANPYNFQLFPRHEVKVG
MPSYSFSCQSSCLTSMAQEGFDFNACVYNGISYLSRAQESAAKVQTGSVLLNSCSFQSTS
AFTVADVIFAERIKTRVKNWMNGCNNQHKTEDTLISSLRKLVGRSEIYGSRPSLTIDVCS
ERQVQLTSEVLKEFVNIVLVRAPAKVGVEAIQVVLTSSEEDKNLLVKEIQDLEEEQGRLV
SGFREVIDLISTSQKPVVVHNSLNDFAFIHSKFLAPLPPTMYEFTSSLLTVFPHILDINH
LMKEIGLFNKMNNLSSAISYLDRRFSTSTDMEVSNEAEETGRVNVHGHCVMRECYLFIKL
CSILKISLEIREGGHTQLPAALQRCSNMFFSSDARYPFDDDVRIWTGKSRTVSVSNLVFL
WGFRSGMSAQDLKDVLCNSHDVFSEEFDVKMVDRTCAIVVFWTPGFSKSFLRIMDSGELF
SNKLKDMISEGLQAADYETYKGVCKSGLWKPDLAECLDQATNEIKELSGAKTQQQEQSLI
CWNNDEMINLDEL
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgtatctccggcgctctctatgcacccaatcagccgccggccaccggcgccgccgtcaa
ttaccggtgaagcaagtgattaaatctaacttctccgagactatagcagaattcaaggac
agcatattcagctccgatttcgtagcggtttcgttgcagaaaaccggcggctactccgcg
ccgtggcaaaaattgcttccgattgacacggaggagacggcttatttgaaggccaagcgc
gccgctgagcggtttcaggttctccagttctcggtttgccctttctcggttaaagcttct
aagctaatcgccaatccgtataacttccagttgtttcccaggcatgaggtgaaagtagga
atgccatcttatagtttttcatgccaatcatcgtgtttgacctctatggcgcaagagggc
tttgattttaatgcttgtgtatacaatggcatatcatacttgtctagagcacaagaatca
gctgcgaaagttcaaactggaagtgtattacttaacagctgcagtttccaatctacttca
gcctttacagttgctgatgttatatttgcagaaaggatcaaaactcgagttaagaactgg
atgaatggttgtaacaatcaacataaaactgaggatactctgataagttcattaaggaaa
ctagtaggaagatctgaaatctatggttcgagaccttccttgaccatagatgtctgcagc
gaacgccaggtgcagcttacatcagaggtgttgaaagagtttgttaatattgtattagta
cgagctccagcaaaagtaggggtagaggctattcaagttgttttgacgagttcagaagaa
gataagaatcttcttgtgaaagaaattcaagatctggaagaggagcagggaagacttgtt
agtggctttcgagaggtgatagacttgatttctacttctcagaagccggttgttgtgcac
aactcacttaatgattttgctttcatacattcaaagttccttgctccacttcctccaact
atgtatgaattcacgagttctttgcttacggtgtttcctcacatacttgacatcaaccat
ctcatgaaggaaattggattatttaataaaatgaataacttgtcatcggccatttcctat
ttggataggaggttctccacgtcaacagacatggaagtttcaaatgaagcagaggagact
ggccgtgtcaatgttcatgggcattgtgttatgagagaatgctatttgtttattaaattg
tgctctatactgaaaatctctttagagattcgtgaaggaggtcatacccaattgcccgct
gcccttcaacgctgctccaatatgtttttttcaagtgatgctagatatcctttcgatgat
gacgtgaggatttggacaggcaaaagtagaactgtcagtgtaagcaatttggtgttcttg
tgggggtttagaagtggaatgtcggcccaagatctgaaagacgttctgtgtaattcacat
gatgtcttctcagaagaatttgatgttaagatggtggataggacatgtgctatagttgtt
ttctggactcctggtttctcaaaaagttttctcaggataatggattctggagaacttttc
tctaataagctgaaagatatgatctcggaaggcctgcaagctgcagattacgagacatac
aaaggagtttgcaaatccggtttgtggaaaccagatttggcagagtgcttggaccaagcc
acgaatgaaatcaaagagctttctggagccaagacgcagcagcaggagcaatcactaata
tgctggaataatgatgagatgattaatctggatgaactttga
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