Salvia miltiorrhiza (redroot sage): 130999529
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Entry
130999529 CDS
T09291
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
smil
Salvia miltiorrhiza (redroot sage)
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smil03019
]
130999529
03041 Spliceosome [BR:
smil03041
]
130999529
03036 Chromosome and associated proteins [BR:
smil03036
]
130999529
Enzymes [BR:
smil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130999529
Messenger RNA biogenesis [BR:
smil03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
130999529
mRNA cycle factors
Common to processing body (P body) and stress granule
130999529
Spliceosome [BR:
smil03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
130999529
Chromosome and associated proteins [BR:
smil03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
130999529
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
130999529
NCBI-ProteinID:
XP_057781061
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All DBs
Position
8:complement(57837692..57842046)
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AA seq
619 aa
AA seq
DB search
MPATWSESVEKAPTGGGVGATSHASRSTYVPPHLRNRPPSASADPPPPSAAVSYAGTLVG
NEPQGYGGSAVGGFQSYGPRNDRNGGGLSRGGGGGGSAWNNRNGGWDRGREREANPFQDD
GVAEPEFAVQENSGINFDAYEDIPVETSGKDVPPPVNTFAEIDLGDALNMNIKRCKYVKP
TPVQRHAIPISLTGRDLMACAQTGSGKTAAFCFPIISGIMKSGQSAQRQPRMPRMAFPLA
LILSPTRELSIQIHEEARKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVD
LLERARVSLQNIRYLALDEADRMLDMGFEPQIRRIVQQMDMPPPGVRQTLLFSATFPKEI
QRLAADFLSNYIFLAVGRVGSSTELILQRIEYVLETDKRSHLMDLLHAQRANGVQAKQAL
TLVFVETKKGADSLEHWLCTNGFPATSIHGDRTQQEREYALRSFKSGKTPILVATDVAAR
GLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNDNNASLAKPLADLMQEA
NQEVPAWLARFAARSNFGGRNRRGQGGGGRFGGRDFRKDSSYNRGGMDMYGGGSNMNNGY
NQSGGYGGGYGSAVTSAWD
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctacgtggtctgaatctgtcgagaaggctcctaccggtggtggtgtaggggct
acttctcatgcttctagaagtacttatgttccgccgcatcttaggaataggcctccttca
gcctcagcagaccctcctcctccctcggctgcagtttcctatgctggaaccttggtggga
aatgaaccccagggatatggtggttcggcagtaggtggatttcagtcgtatggtcctaga
aatgatagaaatggaggtggtctcagtcgtggtggtggtggtggtggtagtgcttggaat
aacagaaatggtggttgggatcgtgggagggaaagagaggctaatccttttcaagatgat
ggagttgcagaaccagaatttgcggtacaggaaaattctgggatcaattttgatgcatac
gaggatattccggtggagacaagtgggaaagatgttccacctcctgtgaatacatttgcc
gagattgacttgggtgacgccttaaatatgaacattaagaggtgcaagtatgtgaaacct
acacctgtgcagcggcacgctataccaatatccctcactgggagggatttgatggcctgc
gctcagactggttcgggaaagactgcggcattctgtttcccgataattagtggaatcatg
aaaagtggccaatctgctcaaagacaaccacgtatgccacgcatggcatttccgctcgct
ctcattctttctccaactagggagctttcaattcaaattcatgaagaagctcgaaaattt
tcttatcaaactggcgtcaaggtggttgttgcttatggtggtgcaccaatcaatcaacag
cttcgagaacttgaaagaggtgtggacatactcgttgcaactcccggacgtttagttgat
ctgttggaaagggctagagtctcgttacaaaatattaggtacttagccctggacgaagcg
gatagaatgttggacatgggttttgaacctcaaatacggagaattgtgcaacagatggac
atgcctccacctggtgtaagacaaacattgctatttagcgccacatttccaaaggagatt
cagagactagctgcagattttctttcgaattacatatttctggctgttggaagagttggt
tctagcactgaattgatcctccaaagaattgaatatgtgcttgagactgacaaaagaagt
cacctgatggacctcctccatgcacaaagagcaaatggcgttcaggccaagcaagcacta
acattagtttttgttgagacaaagaaaggagctgattcgcttgaacactggctttgcact
aatggctttcctgctacatctattcatggtgaccgaacacaacaggagcgagaatatgcg
ttaagatctttcaaaagtggcaaaactccaattctggttgcaactgatgtggcagcacgc
ggccttgacatccctcatgttgcacatgtcatcaacttcgaccttcctaatgatattgac
gactatgtccaccgtattggacgcactgggcgtgctggtaaaacaggactggccactgct
tttttcaacgataacaatgcctcgttggcgaagccattggctgatctaatgcaagaagca
aaccaagaggttcctgcttggctggcgcgctttgcagctcggtctaactttggtggtagg
aaccgccgagggcaaggtggtggaggaagatttggtggccgtgatttccgcaaagattcc
tcctacaatagaggtggaatggacatgtatggtggtggcagcaacatgaacaatggatac
aaccaatctggcggatatggtggaggctatggttctgctgtgactagcgcctgggactga
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