Salvia miltiorrhiza (redroot sage): 130999824
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Entry
130999824 CDS
T09291
Name
(RefSeq) pre-mRNA-processing factor 19 homolog 1-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03040
Spliceosome
smil04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130999824
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
130999824
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smil03041
]
130999824
04121 Ubiquitin system [BR:
smil04121
]
130999824
03400 DNA repair and recombination proteins [BR:
smil03400
]
130999824
Enzymes [BR:
smil01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130999824
Spliceosome [BR:
smil03041
]
Complex B
Other components
Prp19 complex
130999824
Complex C
Prp19-CDC5 complex
130999824
Ubiquitin system [BR:
smil04121
]
Ubiquitin ligases (E3)
U-box type E3
130999824
DNA repair and recombination proteins [BR:
smil03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
130999824
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_MABP1-WDR62_2nd
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_SCAP
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_EIPR1
Beta-prop_WDR75_1st
Beta-prop_WDR19_1st
Beta-prop_HPS5
WDR90_beta-prop_4th
RMC1_N
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_DCAF12
U-box
PEP5_VPS11_N
PROPPIN
zf-Nse
DUF1635
PAS_11
KNTC1_N
PUMA_CC
Beta-prop_VPS8
Motif
Other DBs
NCBI-GeneID:
130999824
NCBI-ProteinID:
XP_057781469
LinkDB
All DBs
Position
8:1485566..1491782
Genome browser
AA seq
529 aa
AA seq
DB search
MNCSISGEVPEEPVVSKSSGLLFEKRLIERHISDFGKCPITGEPMTMDDIVPVKAGKIVK
PRPMQTASIPGMLGMFQIEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARELLAQAERQIPMSVAAQDTVNAAALSNGKRAIEDGEMGPDGKRVRLGISNSIIS
ELTDCNAVLSQQRKKRQIPSTLAPIEAVERYTQLTVNPLHKTSKPGILSMDILYSKDLIA
TAGADSNAVVFDRSSGQVVSTLSGHSKKVTSVKFAAEGELVVTGSADKTVRVWRGSEGGD
FECRHILKDHTAEVQAVTVHATNNYFVTASLDNTWCFYELSSGSCLTQVEDTSGSAEGYT
SAAFHPDGLILGTGNSGGLVKIWDVKTQTNVAKFDGHVGGGGAVTAISFSENGYFLATAA
HDGVKLWDLRRLKNFRTFAPYDENTPTQSVEFDHSGSYLALGGSDIRVYQVANVKSEWNC
IKTFPDLSGTGKITSVKFGPDAKYVAVGSMDRNLRVFGLPEENDDQSET
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgaattgttcaatttctggcgaggtgccggaggagcctgtggtctcgaagagttccggt
ctcctcttcgagaagcgcttaatcgagcgtcacatctcggactttggtaaatgtcccatt
actggagagcctatgacaatggatgatattgttcctgtcaaggctgggaagattgtgaag
ccccgaccaatgcagactgctagtatccctgggatgctgggaatgtttcagatagaatgg
gatggtttgatgctatcaaattttgcattggagcaacagttacatactgctaggcaagag
ctgagccatgccttgtatcagcatgatgcggcatgtcgtgttattgcaaggttgaagaaa
gaaagagatgaggcaagggagttattggcacaagctgaaagacaaatacccatgtctgta
gctgcacaagatacagtgaatgctgctgctttaagcaatgggaaaagagcaatcgaggat
ggtgagatgggtcctgatggtaaaagggttcggctaggaatctcaaatagtattatttca
gagcttacagattgtaacgctgtcctttcacaacaaaggaaaaagcgacagataccttca
acattggctcctattgaagctgtggagaggtacactcaactcactgtaaatcctcttcat
aaaaccagcaaacctgggattctctcgatggacatcttgtactccaaggatctcattgcc
actgctggggccgactcaaatgctgtagtttttgatagatcttcaggccaagtagtatct
actctaagtggccattcaaagaaggttacaagtgtcaaatttgctgcggaaggtgaatta
gtagttactggttctgctgataagacagttcgtgtatggagaggttctgaaggtggagat
tttgagtgtaggcacattctgaaggatcacactgctgaggtgcaagctgttacagtccat
gcaaccaataactactttgtcactgcttcccttgataacacatggtgcttctatgaactt
tcttcaggttcatgcctcactcaggtagaagatacatcgggatctgctgagggatacaca
tctgcggcctttcatcctgatggtctcatccttggaacgggtaattctggggggcttgtt
aagatttgggatgtaaaaactcagacaaatgttgcaaaatttgatgggcatgtaggggga
ggtggggctgtaacggccatttcattttcagagaatggttacttcctggcgactgcagca
cacgatggagttaaactttgggatctgcgaaggctgaaaaattttaggacttttgcccct
tacgatgaaaatacacctacacaatcagtggaattcgaccatagtggaagttaccttgct
ctaggaggatcagacatcagagtctatcaagttgcgaacgtcaaatctgaatggaattgc
ataaaaacattccccgacttgtccggcacaggcaaaataaccagcgtcaagtttggcccc
gatgcaaaatacgtggctgttgggtcgatggatagaaaccttagagtattcgggctaccc
gaggagaatgacgatcaatcagagacatga
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