Salvia miltiorrhiza (redroot sage): 131000354
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Entry
131000354 CDS
T09291
Name
(RefSeq) DNA mismatch repair protein MSH6
KO
K08737
DNA mismatch repair protein MSH6
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
131000354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smil03400
]
131000354
DNA repair and recombination proteins [BR:
smil03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
131000354
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
Tudor_KDM3B
PTM_DIR17_Tudor
DUF3295
AAA_29
YL1
Motif
Other DBs
NCBI-GeneID:
131000354
NCBI-ProteinID:
XP_057782207
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Position
8:complement(5698233..5706331)
Genome browser
AA seq
1307 aa
AA seq
DB search
MAPSKKASNGRSPLVNQQRQITAFFGKNTSGSSPAPSESPSPAVSKLNPKPNAGPSLSPS
PITPSPLQSKRKKPLLVISPNLGASSAEKPISEKKSYGSEVVDRRVRVYWPLDKSWYEGV
VKSFDEVSGKHLVQYDDAEEEKLNLSGEKVEWIEEPVKKKLRRLRRLSVVEDDDDEVDEG
NLKELEDDSDDEDWEGKEGNGVLEDEDCLEDLEVEEEESGSAGIRKNTSSRKRKGGVGEA
VASKKGKNGGELKSSVSKISPSGKAEKLTEPISGTSAYSVKASLLDGPSMVDTTERFAKR
ESEKLHFLELDRRDANRRRPGDEKYDPRTLYLPPNFVKNLTGGQRQWWEFKSKHMDKVLF
FKMGKFYELFEMDAHVGAKELGLQYMKGDQPHCGFPEKNFSINVEKLARKGYRVLVVEQT
ETPEQLGLRRKENGSKDKVVKREICAVVTKGTLTEGESFSTNPDASYIIAVTESCQISAN
EQGVHIFGICAVDVATSKIILGQFRDDADCSSLCCLLSELRPVEIIKPAKLLCTETEKAL
FRHTRNPLVNELVPFSEFWDADKTISEVTSIYQRLDDHSHSPSENDSTFQPSDSSVTNDG
RNCLPEVLSNLISEGENGSQALSALGATLFYLRQAFLDESLLRFAKFDLLPCSGLGEIAQ
KPYMVLDAAALENLEIFENSRNGESSGTLYAQLNHCATAFGKRLLRTWLARPLYHLESIK
ERQDAIAELRGVNQPNVLGFRKELSKLPDMERLLARIFAGSEASGRNANKVVLYEDAAKK
KLQEFISVLRGCELMTNACSALGAILENVESRLLRHLLIPGSGIPDVNSILRHFKDAFDW
EEAYQSGRIIPREGADVSYDAACQVVKDIKSSLGKHLKEQRKLLGDPSISYVTIGKDTYL
LEVPESLSQEIPKEFELRSSKKGFARYWSPVIKDLIGELSRAESEKESKLKSILQRLIER
FCENHIKWRQYISAVAELDVLISLSIANDYYEGRSCRPVIASLNPDEVPFLRAKSLGHPV
LRSDALGEGTFVTNDVTLGGSGHSSFILLTGPNMGGKSTLLRQVCLAVILAQMGADVPAE
SFALNPFDRIFVRMGAKDHIMAGQSTFLTELLETAAMLTSATRSSLVALDELGRGTSTSD
GQAIAASVLEHFVHTVQCRGMFSTHYHRLAVDYQSDPKVSLCHMACQVTKGVGGLEEVVF
LYKLTPGACPKSYGVNVARLAGLPDTVLRKAAAMSQEFERTYGNRLGAAQKWEDKASLII
GNLIKIAATTDYHTFAESKNDGLLTSLQSKARITSTTIVGTLPVQST
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgtcgaagaaggccagcaacgggcggtcgccgttagtcaatcaacagcgacag
atcacggcattcttcggcaagaacacgtcgggatcatctccggctccttcagaatcgccg
tcgccggctgtttcgaagcttaaccctaaacctaacgcgggcccgagtttaagcccgagc
ccgatcactccttcaccccttcagtccaagcgtaagaaacccctcctagtcataagcccc
aatttgggcgcctcttcagctgagaaacctatctcggagaagaaatcgtacgggtcggag
gttgttgacagaagggtcagggtttattggccgctggataagtcgtggtacgaaggtgtc
gtgaagtcgtttgatgaggtatccggaaagcatttggttcagtatgacgatgctgaagag
gaaaagttgaatctttcaggggaaaaggttgagtggattgaggagccggtgaaaaagaag
cttcggaggttaagaaggctttcggtagtggaagatgacgacgatgaggttgatgagggc
aatctcaaagaactagaagatgattcagatgatgaggactgggagggaaaggaagggaat
ggggtattagaagatgaggactgtttggaggatttggaggtggaggaagaggaaagtgga
agcgctggtattaggaagaatacgagctcgaggaaacgaaaagggggtgtaggagaagcc
gttgctagtaaaaaaggcaagaatggtggggagctgaagagtagtgtttccaagatttct
ccttcaggcaaggctgagaagctgaccgaacctattagcggaactagtgcttatagtgta
aaggcatcccttctggatggcccttcaatggtagacacgacggaaagatttgccaaacgt
gaatcagagaaattgcacttccttgagttagatcgtagagatgccaaccgaaggcgccct
ggggatgagaagtatgatcctagaaccttatacttgcctccaaactttgtgaagaattta
acgggtggccagcggcaatggtgggagtttaagtcgaagcatatggacaaagttctcttt
ttcaagatgggcaagttttatgaactttttgaaatggatgcacatgttggagccaaagaa
cttggcttgcagtatatgaagggagaccaacctcactgtggattcccagagaagaacttc
tcaatcaatgtagagaagctggcaagaaagggttatcgagttctcgttgtggagcaaaca
gagacacctgaacagcttggtcttcgtcgaaaagaaaatggctccaaggataaggttgtc
aaacgcgagatatgtgctgttgtgacaaaaggaactttaacagagggagaaagtttttca
acaaaccctgatgcttcatatataattgctgtgacggaaagctgccaaatttcagcaaat
gaacaaggtgtccacatatttggtatctgtgcggttgatgttgctacaagcaagattatc
cttgggcagttcagggacgatgctgattgcagctcgctttgctgtttattatctgaatta
aggccagtggaaattataaaaccggctaagttgctgtgtactgagactgaaaaggctcta
tttaggcatacaagaaatcccctggtcaacgagctggttcctttctctgaattttgggat
gctgataaaactatttctgaagttacaagcatttatcagcgccttgatgatcattctcat
agtccatcagaaaatgatagtacttttcagcccagtgattcttcagtgacaaatgatggt
agaaactgcctaccagaagtgctatcaaacctcataagtgagggtgaaaatggaagccaa
gcactatcagcacttggtgcaactcttttctatttaaggcaggctttccttgatgaatct
ctcctcagatttgctaaatttgatttgctcccatgctctggtcttggtgaaattgcccaa
aaaccatacatggttcttgacgctgctgccttggaaaatcttgagatatttgaaaatagc
agaaatggagaatcttctgggacattatatgctcaattaaaccattgtgccacagcattt
ggtaaacgactgcttaggacatggcttgccagacctttgtatcatcttgagtcaattaag
gagcggcaggatgctatagccgaactgaggggagttaatcaacctaacgtgcttggcttc
agaaaagagttatcaaagctacctgacatggaacgcttgcttgcacgcatctttgctggc
agtgaagctagtggcaggaatgcaaataaagttgttctctatgaggatgcggcaaaaaag
aagctccaagagttcatttcagttctgcgtggatgtgaattgatgaccaatgcatgctct
gcacttggcgctattttagagaatgtggagtctagactacttcgtcatctattaattcct
ggttcagggattcctgatgtcaattcaattttgaggcatttcaaggatgcctttgattgg
gaggaagcatatcaatcagggcgcatcatacctcgagaaggggctgatgtttcttatgat
gctgcgtgccaagtagtgaaagacattaaatccagtctcggaaaacatctaaaggagcag
cggaaattacttggagatccatctatttcttatgtaacaattggaaaagatacatacctg
ttggaagtgcctgagagtttatcacaggaaattccgaaggaatttgaactacgatcatcg
aagaagggttttgcccgatactggtccccagtgattaaagatttgataggagagctttca
cgagctgaatctgagaaggagtcaaaattgaagagcattcttcagaggttaatagaacga
ttttgtgagaatcatattaaatggaggcaatacatctctgctgttgcagagctggatgtc
ttaatcagcttatcaattgcaaatgattattacgaagggagaagttgtcgcccagttata
gcttcattgaatcctgatgaagtgccattcctcagggctaaaagcttagggcaccctgtt
ttaaggagtgatgccctcggagagggcaccttcgtcaccaatgatgttacactaggtggt
tctggtcactccagctttatactccttaccggtcctaacatgggtgggaagtctactctt
ctccgccaagtttgcttggctgtgattttggcccagatgggagctgatgtgcctgcagaa
agttttgctttgaatccttttgaccgtatatttgttcgaatgggtgctaaagatcatatt
atggctggtcaaagcacatttctgacggagcttctggaaactgcagccatgctgacttca
gcaacgcgtagctcacttgtggcactggacgagctgggacgaggaacttcaacatcagat
gggcaagccatcgctgcatcggtgctcgaacattttgttcacacagtgcaatgccgggga
atgttttctacacattatcatagattagctgttgactaccagagtgatcctaaggtctcc
ctctgtcatatggcttgccaagtcacaaaaggagtcggaggtctcgaggaagtagtcttc
ctatacaaattgacacccggtgcatgccctaaaagctacggtgttaatgttgctcgttta
gcaggacttcctgatacagttctacgaaaagctgcagcaatgtctcaggagtttgaacga
acttatggcaatagattaggcgccgctcaaaagtgggaagacaaagcatcattgatcatc
ggaaacttgataaagatcgcagctactacagactaccacactttcgctgaaagcaagaac
gatggcttgttaaccagcctgcagtccaaggcgaggattacttctacaacaatagtagga
actttgcctgtacagtctacctag
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