Salvia miltiorrhiza (redroot sage): 131000392
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Entry
131000392 CDS
T09291
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131000392
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smil03041
]
131000392
03009 Ribosome biogenesis [BR:
smil03009
]
131000392
Enzymes [BR:
smil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131000392
Spliceosome [BR:
smil03041
]
Complex A
U2 snRNP components
U2 related factors
131000392
Complex B
131000392
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
131000392
Ribosome biogenesis [BR:
smil03009
]
Eukaryotic type
90S particles
Helicases
131000392
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ResIII
nSTAND3
ABC_tran
T2SSE
SRP54
AAA_30
Flavi_DEAD
UvrD-helicase
AAA_7
AAA_29
SLFN-g3_helicase
NACHT
Motif
Other DBs
NCBI-GeneID:
131000392
NCBI-ProteinID:
XP_057782248
LinkDB
All DBs
Position
8:5965133..5969214
Genome browser
AA seq
728 aa
AA seq
DB search
MGTERKRKVSLFDVVDESAVPGKFSRTNGGGKMAADTVPSTINKWNSKPYSQRYYEILDK
RKTLPVWHQKDEFLQVLRANQTLILVGETGSGKTTQIPQFVLDAIEVESADKRRKFMVGC
TQPRRVAAMSVSRRVAEEMDVAIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPL
LERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFFGAPLM
KVPGRLHPVEIFYTQEPERDYLEAAIKTVCQIHLCEPPGDILVFLTGEEEIEDACRKIGK
EIANNGDQVGPVKIVPLYSTLPPAMQQKIFEAAPPPAKEGGPAGRKIVVSTNIAETSLTI
DGIVYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTERSF
HNDLVPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALD
DDGNLTKLGEIMSEFPLDPQMAKMLVVSSEFNCSNEILSISAMLSVPNCFVRPREAQKAA
DEAKARFGHIDGDHLTLLNVYHAYKQNKEDPQWCYENFVNQRALKSADNVRQQLARIMAR
FNLKLCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHK
PEWVIYNEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLSNFPNCEAKRKLEKLYKKRENA
KDESRSKK
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgggcacggagagaaagaggaaggtgagtctgtttgacgtagtggacgagtccgccgtg
ccggggaaattttccaggaccaacggtggtggcaaaatggccgcggacacggtgccatcg
acgataaataagtggaattcgaagccttattcgcagagatattacgagattttggacaag
cggaagactctgcccgtgtggcatcagaaggatgagtttttgcaggttctcagagctaat
cagacgctgattcttgtcggtgaaaccggtagtggtaaaaccactcagattccgcaattt
gtgctggatgccatagaggtagagtcagctgataagcgcagaaagttcatggtcggatgt
actcagcctcgaagggtggctgctatgtctgtttcaaggagagttgcggaagagatggat
gtggcgattggtgaagaagtaggttatagtattcgttttgaggattgcagcagtgctcga
actgtattgaagtacttgacagatggtatgcttttgagagaagccatgaccgatccactt
ctggaaagatacaaagtgataattcttgatgaggcccacgagaggactttggcaacggat
gttttatttgggcttctgaaggaggtgttgaaaaataggcctgacctcaagctagtagtc
atgagtgccacccttgaggcagagaagtttcaaggttatttctttggtgcaccactaatg
aaagttcctgggaggctccatcctgtagagattttctatacccaggagcctgagagagat
taccttgaagcagctataaagactgtttgtcagatacacttgtgtgaacctcctggtgat
atactcgttttccttaccggtgaagaggaaattgaagatgcatgtaggaaaattgggaag
gaaatagccaataatggggatcaagttggaccagtgaaaattgtccctttgtactcgaca
cttcctccagcaatgcagcagaagatttttgaagctgctccacccccagcaaaagagggt
ggtcctgcaggaagaaagattgttgtttccaccaatattgctgaaacatctcttacaatt
gatggcatagtttacgtcatagaccctggttttgcaaaacagaaagtttataatcctcga
attcgtgttgaatctctcttggtgtctcctatatcgaaggctagtgcccatcaacgttct
ggacgtgctggaagaacacagccgggcaagtgctttaggctatacacggaaaggagcttc
cataacgaccttgtaccgcaaacatacccggagatattgaggtcaaatcttgcaaatacc
gttttgactttgaaaaagttgggaatagatgatctggtccattttgatttcatggaccca
cctgctcctgagacacttatgagagcattagaggtcttgaattacttgggagcccttgat
gatgatgggaacctgaccaagttgggtgagatcatgagtgagtttccgctggatcctcag
atggcaaaaatgctggttgttagttcagaatttaattgttccaatgagatcctctcaatc
tctgcaatgctttcggtacccaattgctttgtccggcctagggaggctcaaaaagctgcc
gatgaagcaaaagctcgttttggtcacattgatggagatcatctcactctgttgaatgta
tatcatgcttacaaacaaaataaggaagatccacagtggtgctatgaaaacttcgtcaat
cagagggctcttaaatcagcagacaatgtcagacagcagctagcaaggatcatggccaga
ttcaatttgaagctttgtagcacagattttaacagccgtgactactatgtcaatatcagg
aaggctatgctagctggatatttcatgcaggttgcccatttagagcgcaccggccactat
cttactgtgaaagacaaccaagttgttcacttgcatccttcaaattgcctggatcacaaa
ccagagtgggttatctataatgaatatgtcctaacaagcaggaatttcattcgtaccgtg
acagatattcgtggtgaatggttggttgacattgcaccacattactatgatctctcaaac
ttccccaactgcgaggcaaagcgcaagcttgaaaaactgtataagaagagggagaatgca
aaggatgagagtcgaagcaagaagtga
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