KEGG   Salvia miltiorrhiza (redroot sage): 131001278
Entry
131001278         CDS       T09291                                 
Name
(RefSeq) sm-like protein LSM5 isoform X1
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
smil  Salvia miltiorrhiza (redroot sage)
Pathway
smil03018  RNA degradation
smil03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:smil00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    131001278
  09123 Folding, sorting and degradation
   03018 RNA degradation
    131001278
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smil03019]
    131001278
   03041 Spliceosome [BR:smil03041]
    131001278
Messenger RNA biogenesis [BR:smil03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     131001278
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     131001278
Spliceosome [BR:smil03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    131001278
SSDB
Motif
Pfam: LSM DUF7452
Other DBs
NCBI-GeneID: 131001278
NCBI-ProteinID: XP_057783607
LinkDB
Position
8:complement(14584122..14586249)
AA seq 103 aa
MSSNNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEG
RRITKLDQILLNGNNIAIVSLTELLSISPKARLSHFIHSLSII
NT seq 312 nt   +upstreamnt  +downstreamnt
atgtcgtctaacaatccatcgcagctcctcccatcagagttgattgaccgatgcatcggg
tcgaaaatatgggtgataatgaagggcgacaaggaactggtgggtaccctccgcggcttc
gatgtctatgttaatatggtgttggaagatgttactgaatatgaaatcacctctgaagga
cgtcgtattacaaaacttgaccagatcttactcaacggaaacaacattgccatagtaagt
ctgacagagctgttaagcatttctccaaaagcccgtctctcacatttcattcattctctt
tcaataatttga

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