Salvia miltiorrhiza (redroot sage): 131001422
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Entry
131001422 CDS
T09291
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03022
Basal transcription factors
smil03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
131001422
09124 Replication and repair
03420 Nucleotide excision repair
131001422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smil03021
]
131001422
03400 DNA repair and recombination proteins [BR:
smil03400
]
131001422
Transcription machinery [BR:
smil03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
131001422
DNA repair and recombination proteins [BR:
smil03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
131001422
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
MetRS-N
Motif
Other DBs
NCBI-GeneID:
131001422
NCBI-ProteinID:
XP_057783796
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Position
8:complement(16389058..16395409)
Genome browser
AA seq
453 aa
AA seq
DB search
MPQVRIVARNFMDMVASLPAVKLDKLYENSFICEAILRSLPPLAKKYVLQLLYIDGPVSA
KWLEEWVLADGASKHKVAIDRLIQLRVLTETVERKKEATYLFNPPFQRNLQKHILHGGVS
PREPMPLNVTVRLPSAEELDAYAVEQWELFLLHLINSAEVERSMNISSSMMKVFQRGLLS
QKDDREPPKLTESGFQFLLMDTNAQLWYIIREYITNCEEQGVDTADLISFLLELSFHVMG
KAYNLNTLSDIQRTIVKDLVDLGLVKLQQGRKESWFIPTKLATNLSISLADTATRKQGFV
VVETNFRLYAYSTSKLHCEILRLFARVEYQLPNLIVGAINKESLYKAFLNGITAEQIVSF
LQQNAHPRVAEKIPTVPENVTDQIRLWEADLNRVEMTAAHLYDEFPSRDVFEAACDFARE
YGGLLWENSKKMRLVVKAEIFTQMKEFLRRQKQ
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaagtgaggattgtggctagaaactttatggatatggtggcatccttgcctgcg
gtgaaacttgacaagctatatgaaaattcgttcatatgtgaagccatcttgagatctttg
cctccactagcaaaaaagtatgtgctgcagctgctgtacatagatggaccagtatcagcg
aagtggctggaagaatgggttcttgctgatggtgcctcgaagcacaaagtagctatagac
aggttgattcagctgagggtcctgactgaaactgttgaacggaagaaagaagctacttac
ctatttaatccaccatttcaacggaatctccagaagcacatactgcatggtggagtttca
cctagggaaccgatgccgttaaacgtcactgtgaggcttcctagcgcagaggaattagat
gcctatgctgtcgaacagtgggagttgtttttgctgcacctcataaactctgctgaagtg
gaaaggtcgatgaacataagctcctcgatgatgaaagtgttccagcgtggtcttctcagt
caaaaagacgatagagaacctccaaaattgacggagagtggcttccagtttctgctgatg
gacacgaatgcacagctttggtacataattagagaatatataactaactgcgaggagcaa
ggtgtggatacagccgaccttatatcattcttgttggagctcagctttcatgttatgggc
aaggcctataacttaaacactttgtcagatatacagagaaccatagtaaaggatcttgtc
gatttgggattggtaaagctccagcagggcaggaaggagagttggtttattcctactaaa
ttagctaccaatctctccattagcttagcagatacagcaaccagaaaacagggctttgtt
gtcgtggaaacgaactttcggctgtatgcatactcaacatccaaattgcattgcgagatc
ttgcgcttgtttgcaagggtcgaataccagctacctaaccttattgttggtgcgattaac
aaagagagcttgtataaagcatttttaaatggcattactgcagagcagatagtgtccttt
cttcaacaaaatgctcatcctcgagtcgcggagaagatacctactgtacccgaaaacgtc
accgaccagattaggttatgggaagcagatttgaatagagtggagatgacggctgcacat
ctttatgatgaattcccatcaagggacgtcttcgaagccgcctgtgactttgcccgggag
tacgggggcttgctgtgggagaactcgaagaagatgcgccttgtcgtcaaggcagaaatc
ttcacgcagatgaaagaattccttcgtaggcagaagcaataa
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