Salvia miltiorrhiza (redroot sage): 131001636
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Entry
131001636 CDS
T09291
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131001636
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smil03041
]
131001636
Spliceosome [BR:
smil03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
131001636
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_Prp19
WD40
Beta-prop_THOC3
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Gbeta
EIF3I
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
Beta-prop_Aladin
Beta-prop_EIPR1
PRP4
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_DCAF4
NBCH_WD40
WDR90_beta-prop_4th
WD40_RFWD3
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
Beta-prop_Vps41
Beta-prop_WDR41
Beta-prop_SCAP
Nbas_N
WD40_like
Tricorn_2nd
Motif
Other DBs
NCBI-GeneID:
131001636
NCBI-ProteinID:
XP_057784169
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Position
1:62105063..62109085
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AA seq
573 aa
AA seq
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MDIDEENTVTTSATASVSPAGDEPMDSAINAMSLQPVQPAIAPTAPTPVIPPIAPIPTAP
HSVPRPLAPIPVRPPVHRPPPPKGDTRTSDSDSDEEGLGLNRTATGHEYEISEESKLARE
RQEKAVQELLMKRRTAALAVPTNDNAVRARLRRLGEPITLFGEREMERRDRLRALMAKLD
SEGQLEKLMKAHEDEEAGGTVGPSEPEEDIQYPFYTEGSQSLFEARREIAKYSIIKSALR
LHRARRKREDPDEDLDAEVDWSLKQAANLVLESSEIGDDRPLSGCSISHDGKMLATCSLS
GVAKVWSMPEVKKVSALKGHTERATDVAFSPINHQLLATASADRTARLWNPEGSVLRTFE
GHLDRLARIAFHPSGKYLGTTSFDKTWRLWDIETGEELLLQEGHSRSVYGLSFHHDGSLA
ASCGLDSLARVWDLRSGRSILALEGHVKPVLGVSFSPNGYHLATGGEDNTCRIWDLRKRK
CLYIIPAHSNLLSQVKFEPQEGYFLVTASFDMTAKVWSSRDFKPVRTLSGHESKITSLDV
VADGHYITTVSHDRTIKLWASKEALRDKEMEID
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atggacatagacgaggagaatacagtcactacttcagctactgcttcagtttcacctgct
ggggatgaacccatggattctgctatcaatgcaatgtcacttcaaccggttcagcctgca
attgcacccactgctccaaccccagtgatacctcctattgccccaatacctactgcacct
cactcagttccgagaccattggctccaatacctgtccgccctccggtccataggcctcct
ccaccaaagggagatacaagaactagtgattctgattctgatgaggaagggttgggtttg
aatcggactgctacaggccatgagtatgagatctcagaagaaagcaaactggccagggag
agacaggagaaagcagtacaggaacttctgatgaagcgtcgcactgctgccttggcagtg
cccactaatgacaatgctgtccgagctcggcttcgtcggcttggtgaacctataactctc
tttggagagagggagatggagaggcgtgatcgtctacgggctcttatggcaaaacttgat
tctgaagggcagttggagaagctgatgaaagctcatgaggatgaagaagctggaggcacg
gtgggaccttctgaacctgaagaagacattcagtatcccttttacactgaaggttcacaa
tcactatttgaagcccgaagagagattgcaaagtattctattattaagtcagcattgcgc
ctccatcgtgcaaggagaaaaagggaagatcctgatgaggatttggatgctgaggtagat
tggtctttgaagcaagcagcaaatctagtactagaaagcagtgagattggcgatgataga
cctctttcaggatgctcaatttcacatgacgggaagatgcttgccacctgttctctaagt
ggagttgcaaaagtgtggagcatgccagaagtaaagaaggtttctgctcttaaagggcat
accgaacgagctactgatgttgcattctctccaatcaaccaccaattgttggctactgcc
tctgctgacaggactgcgagactatggaatccggaggggtctgtcctaagaacatttgag
ggccatttagatcgccttgctcggatagccttccatccatcgggaaagtatttgggtacg
actagctttgacaagacttggagattatgggatatagagactggtgaagagttgcttctc
caagaaggtcatagtaggagtgtgtatggattatctttccatcatgatggctccttagca
gcttcgtgtggactggattctcttgctcgtgtgtgggacctgagatctggacgaagtatt
cttgctctggaaggccatgtcaaacccgttcttggtgtaagtttttctcccaatgggtat
catctggctactggtggtgaagacaatacttgcaggatatgggatttgaggaagagaaaa
tgtttgtatataatacctgctcactccaacctgctttcgcaagtcaaatttgaaccgcag
gagggatactttttagttacagcttcatttgatatgactgctaaggtttggtcttctaga
gattttaagcctgtaaggacattatctggccatgaatcaaagattacgtcactggatgtt
gttgcagatggacactacattacaactgtctcacatgatcgaacaattaagctatgggcg
agtaaagaagcattgagagacaaggaaatggaaattgactga
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