KEGG   Salvia miltiorrhiza (redroot sage): 131002385
Entry
131002385         CDS       T09291                                 
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
smil  Salvia miltiorrhiza (redroot sage)
Pathway
smil04120  Ubiquitin mediated proteolysis
smil04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:smil00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    131002385
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    131002385
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:smil04121]
    131002385
Enzymes [BR:smil01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     131002385
Ubiquitin system [BR:smil04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    131002385
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     131002385
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_RIG_2nd WDR55 Beta-prop_EIPR1 Beta-prop_DCAF4 WD40_MABP1-WDR62_2nd EIF3I Beta-prop_WDR19_1st zf-C3HC4_2 Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd zf-C3HC4 Beta-prop_EML Beta-prop_HPS5 WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st WD40_like Beta-prop_CAF1B_HIR1 zf-C3HC4_3 WD40_RFWD3 zf-RING_2 U-box zf-RING_UBOX Beta-prop_IFT140_1st Beta-prop_DCAF12 zf-C3HC4_4 Beta-prop_SCAP Beta-prop_WDR35_TULP_N DUF1664 zf-RING_5 WDR90_beta-prop_4th YbfN YpoC RING_XB3-XBAT31 zf-Nse zf-RING_6 zf-RING_10 zf-rbx1
Other DBs
NCBI-GeneID: 131002385
NCBI-ProteinID: XP_057784867
LinkDB
Position
Unknown
AA seq 660 aa
MEDRSTGFTVPSVEHGGDPAPGAEEKELSCPICMQIMKDAFLTSCGHSFCYMCIVTHLQN
KSDCPCCAQFLTPSQLFPNFLLNKLLKKTSAHQLSKLASPVEQFRQSLEQGCQVSVKELD
SLVSLVAEKKRKLEQEEAERNMQILLDFLHCLRKQKVNELNEVQSDLQYIKEDLNAVERH
RIELYQAKERCSVKLKMVSGDPLGIRSRTSSRPMDRNIPGLVSNSYNIRGITSMNFQYKK
DEGRAQVNIPRTQSKEAAALNEPTSQHMSQSGLAVMRKKRVHAQFNELQEFYLQKRRQLV
DHLEKQGKKDKSIIRREGYSSGLAEFQSVLSTFTRFSRLRVIAELKHGDLFHSPNIVSSI
EFDRDDELFATAGVSRRIKVFDFSSVVNEPTDVHCPVIEMTTRSKLSCLSWNKFTKNHIA
SSDYEGIVTVWDVGTQQSIMEYEEHEKRAWSVDFSPTEPSMLVSGSDDCKVKIWCTRQEG
SVINIDMKTNICCVKYNPESSKYVAVGSADHHIHYYDLRNPCHPLCVFSGHKKAVSYVKF
LSSNELASASTDSTLRLWDVKDNLLVRTFRGHTNEKNFVGLTVNVNDDFLSCGSETNEVF
VYHKAITKPVTWHKFGSPDIEDIEEDAGSYFISAVCWKVGSPTILAANSRGTIKVMALTA
NT seq 1983 nt   +upstreamnt  +downstreamnt
atggaggaccgctccacgggtttcacggtgccgtcggtggagcacggcggagatccagct
ccgggggcggaggagaaggaattgtcgtgcccaatttgtatgcagattatgaaggacgcc
ttcctaacgtcgtgcgggcatagcttctgctacatgtgcatcgtcactcatctccagaac
aagagcgattgcccctgttgcgctcagtttctcaccccctctcaactcttccccaatttc
ctcctcaacaagctattgaagaagacatctgcccatcaactatcaaaattagcatctcct
gtagaacaatttcgtcagtcgttggaacagggctgtcaagtgtcagtgaaggagttagac
tctctagtatctctggtggcagagaaaaagagaaaattggaacaagaagaagcagagaga
aacatgcagattctgctggactttttacactgcttaaggaagcaaaaagttaatgaactc
aacgaggttcaaagtgatctgcaatacatcaaggaagacttaaatgctgtggaaagacac
aggatagaactataccaagcaaaagaaaggtgttcggttaaactgaagatggtctccggt
gatcctctcggaattagatctcgcacttcctctaggccaatggatagaaacattccaggc
cttgtatccaactcttacaacataagaggaattacatctatgaacttccagtacaagaaa
gatgaagggagggctcaagtaaatatccctcgaacccagagcaaggaagctgctgctctg
aatgaaccaacctcacaacatatgagccaatctggtttggcagttatgcggaaaaagcga
gttcatgcacagtttaacgaacttcaggagttttacttacaaaagaggcgtcaattggtc
gaccatttagagaagcaaggaaagaaagataaatccatcatcagaagagaaggatatagt
tctggtttagcggaattccagtcagttctaagtacgtttactcggttcagtcgattacga
gtaattgctgaacttaaacatggggacctcttccactcacccaatatcgtttcaagtata
gagtttgatcgtgatgatgagctgtttgctactgctggagtttcacggcgcataaaagtt
tttgatttctcatcggttgtgaatgaacctacagacgtgcattgccctgttattgagatg
acaacacgatctaagcttagctgcttgagctggaataagttcacgaaaaatcacatagcc
agtagtgattatgagggcatagtaactgtctgggatgtcggcactcaacaaagcatcatg
gaatacgaggagcatgagaaacgagcatggagtgttgatttctccccaacagaaccatca
atgcttgtatctggtagtgatgactgcaaggtaaaaatttggtgcacaaggcaagaaggt
agtgtcatcaacatcgatatgaagacaaatatatgttgtgtgaagtacaatcccgagtct
agcaaatatgttgcggttggctctgcagatcatcacattcactactatgacttgagaaat
ccctgccatccactctgtgttttcagtggccataaaaaggcggtttcgtatgtgaaattt
ctttccagcaatgagcttgcttctgcttcgacagacagcaccctccggctatgggacgtc
aaggacaatctactcgttcgtacgtttagagggcacaccaacgagaagaatttcgtcggc
ctaaccgtgaacgtgaacgatgatttcctatcttgtggcagtgaaacaaatgaagtcttt
gtctatcacaaggctatcacgaaaccagtgacgtggcataagttcggatccccggacatc
gaggatattgaggaagatgcaggatcttacttcataagcgctgtatgctggaaagtggga
agtcccaccatattggctgccaacagtagaggaacaatcaaagtgatggctctcactgct
tga

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