Salvia miltiorrhiza (redroot sage): 131002733
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Entry
131002733 CDS
T09291
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7-like
KO
K14409
protein SMG7
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131002733
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smil03019
]
131002733
Messenger RNA biogenesis [BR:
smil03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
131002733
mRNA cycle factors
Common to processing body (P body) and stress granule
131002733
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_11
Motif
Other DBs
NCBI-GeneID:
131002733
NCBI-ProteinID:
XP_057785187
LinkDB
All DBs
Position
1:62559170..62565033
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AA seq
974 aa
AA seq
DB search
MMTIPMENEKESSSRELVENLFNKNIELEKNRRKAAQARVPSDPNTWQHMRENYEAIVLE
DHAFSEQHDIEYALWQLHYRKIEELRALFNAALTSAGSAASQNGKGPGRSGSDRLAKIRS
QFKTFLSEATGFYHDLMLKIRAKYGLPLEYFSDGNQISMSKDGNKSSEVKKWLISCHRCL
IYLGDLARYKGLYGGEGDSKARDFTAASTHYMQASSLCPSNGNAHHQLAILAGYSNDELV
SIYRYFRSLAVDNPFITARDNLIIAFEKNRLNYSLLVCDGKPVKEKKLSSRVPGKGRGKG
STRLSNKDTRVATTAVKEMVLNNADLLRAFITRFIRLNGILFTRTSLETFPEVLSTVKSD
LLELLPSGPDDDSNFGSDAAECKLAIVRIIAILIFTVQNVSKESENQSYADILQRSVLLQ
NALTGTFEFVGCILERCKLLNDPSSSYLLPGIMVFIEWLACCPDVAIGSELEEKQINART
YFWNNCISLLNKLLSNMSIFGNEREEEMCFFNMRKYDESETNRVALSEDFELRGFIPLLP
AQVILDFSKKHSFGDKERVARVQRIVAAGKALANFARIGQEEVHFDTKLNKFVTGSEPQV
SDDSLPTNPLEANLNNNSMGISVGTEAAYVHLTKKEVCAEDDDEDEVIVFRPTTNEKHVD
DSSLNINCSELLAPISGAACKIDAGKEHGSFSVGHDSFFLQEEINPVPSATVAYNTSPYL
LPVQPIISKWPVEHVPDVNGLSNLNLMDSGSLWKSEPLDQFEVSEPAAFSVPYPRFVANG
ASHNYSIRAPQTAVPSKFDSIMSSEAADHDLSVKPISAVAPGLKKNPISRPVRRAGPPPG
FGSVPSKVLDESSKVTMAYDNPPLPQVDEYNWLDRYSLSSVNQSVGFSTSFNQVGPTIHS
NGSNEMASFPFPGKQTPCFQVPSENHKDWQHYPHMELRKPYENEQQQFQNGNQQHVGPPQ
QYKGQSLWENSFFV
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atgatgacaattccgatggaaaatgaaaaagaaagctcctcaagggagcttgtagagaat
ctcttcaataagaacattgaattggagaaaaatagaaggaaagcagcgcaggccagagtc
ccttcagatcctaatacatggcaacatatgcgtgagaattatgaagctattgttcttgaa
gaccatgccttctctgagcaacatgatatcgaatatgctctatggcaactgcattacagg
aagattgaggagctaagggcactctttaatgcagccttgacttcagcaggatccgctgca
tcccaaaatgggaaaggtccaggccgatctggctctgatcgacttgcaaagatccgttca
caatttaagactttcctatctgaggcaactggattttatcatgatttgatgttgaagata
agagctaagtatggtctgccactagaatatttctctgatggtaatcagatctccatgtca
aaagacggaaacaaatcatctgaggtgaaaaaatggttgatatcttgtcaccgttgtctg
atatatttgggggatcttgctcggtacaaaggattgtatgggggggaaggggactctaag
gcgcgggattttacagctgcatcaactcactatatgcaagcttcctctctatgcccttca
aatggcaatgcacatcatcagcttgctatacttgctggatattcaaatgatgagctggtg
tctatttaccgctattttcggagtctagctgttgataaccctttcatcactgcgagagac
aacttgatcattgcatttgagaagaatcgtctgaattattccctattagtctgtgatggt
aaacctgtcaaggagaagaagctatcttcaagggtacctgggaaaggaagaggcaagggg
tcaaccaggctgtctaacaaagatactagagtggctactactgcagttaaggagatggtt
ctaaataacgctgatctcttgagagcttttatcacacgatttataaggctgaatggcatt
ctcttcacgcggacaagcttggagacttttcctgaagttttatccactgttaaaagtgac
ctactagaactccttccatctgggccagatgatgactcaaactttggttcagatgctgct
gagtgcaaacttgcaattgtcaggataattgctattctaatatttactgtgcaaaacgtg
agcaaggaaagtgagaaccaatcctatgctgacattctacaacgttcagtcctacttcaa
aatgctcttactggtacctttgagttcgtgggatgcatacttgaacggtgcaaactacta
aatgatccttcatcgagctatttattgcctggcattatggttttcatagagtggttggca
tgttgtcctgatgttgcaattggaagtgaactggaggagaaacaaattaatgcgaggact
tatttctggaacaactgcatctccttattgaataaactcttatcaaatatgtctattttt
ggtaatgaacgtgaagaggagatgtgtttctttaatatgagaaagtatgatgagagtgag
actaatcgtgttgcattatctgaggacttcgaattaagaggatttattcctctcctccct
gcccaagtcatccttgatttctcaaagaagcattcattcggtgacaaagaaagagttgct
cgtgtgcagagaattgttgcggctggaaaggctcttgccaactttgcccgaataggccag
gaggaagttcattttgacacaaagctgaataaatttgtcactggtagtgagccccaggtt
tctgatgacagtctgcccaccaatcctctagaggccaatttgaacaacaactctatgggc
atttctgttgggactgaggcggcatatgttcatcttacaaagaaagaggtttgtgctgag
gatgatgatgaggatgaggtgattgtgtttaggcctaccacaaatgagaaacatgtggat
gactcctctttaaatataaattgttcagagcttcttgctccgatcagtggggctgcttgc
aagattgatgctggtaaagaacatggttctttctctgttggacatgatagttttttcctt
caggaagaaataaatcctgttccatcggcaacagttgcttataatacttctccatatctg
ttgccagtccaacccattatatcaaagtggcctgtagaacatgttccagatgtcaatggt
ttgtccaacttaaatctgatggacagtggttctttgtggaaatctgagccgctagaccag
tttgaagtttctgaacctgctgccttttctgttccgtacccacgttttgtcgctaatggt
gctagccataattattccattcgggctccccaaactgctgttccatcaaagtttgactca
ataatgtcctctgaagcagctgatcacgacctgtctgtgaaaccaatatctgctgttgca
ccaggtttaaagaagaatcctattagtcgacctgtcagacgcgcaggtccaccacctggt
tttggctctgttccttccaaagtcctggacgagtcatcgaaggtgaccatggcatatgat
aatcctccacttccacaagtagatgagtataactggctagatagatattccttgtcatca
gtaaatcaaagtgtcggattcagcacttcattcaatcaagtgggacctactatccattct
aatggttcaaatgaaatggcaagcttccctttccctggaaagcaaactccgtgttttcaa
gtaccaagtgaaaaccacaaagactggcaacactatcctcatatggaactcaggaagcct
tatgagaacgagcagcagcaatttcagaatggaaatcaacagcatgttggtcctcctcaa
cagtataaaggacaatctctctgggagaatagtttctttgtgtga
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