KEGG   Salvia miltiorrhiza (redroot sage): 131002810
Entry
131002810         CDS       T09291                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
smil  Salvia miltiorrhiza (redroot sage)
Pathway
smil03013  Nucleocytoplasmic transport
smil03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:smil00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    131002810
  09122 Translation
   03013 Nucleocytoplasmic transport
    131002810
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smil03019]
    131002810
   03041 Spliceosome [BR:smil03041]
    131002810
Messenger RNA biogenesis [BR:smil03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     131002810
Spliceosome [BR:smil03041]
 Complex C
  Other components
   EJC/TREX
    131002810
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    131002810
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_Prp19 WD40_CDC20-Fz WD40 WD40_WDHD1_1st Beta-prop_WDR3_1st Beta-prop_EML_2 EIF3I ANAPC4_WD40 Beta-prop_CAF1B_HIR1 WD40_Gbeta WDR55 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_WDR19_1st Beta-prop_NOL10_N Beta-prop_RIG_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_Aladin Beta-prop_TEP1_C Beta-prop_Vps41 Beta-prop_WDR90_POC16_2nd DSE1_N WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st eIF2A Beta-prop_EIPR1 Beta-prop_WDR35_TULP_N Beta-prop_EML NBCH_WD40 Beta-prop_HPS5 WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_DCAF12 Tricorn_2nd TRM82_WD Beta-prop_IFT80_2nd CFAP251_N WDR90_beta-prop_4th PAC11 B-prop_COPA_B_2nd Beta-prop_WDR41 DUF7099 Beta-prop_Nup120_160 WD_LRWD1 PROPPIN TP_0598_N Beta-prop_WDR11_1st
Other DBs
NCBI-GeneID: 131002810
NCBI-ProteinID: XP_057785260
LinkDB
Position
Unknown
AA seq 313 aa
MEDTIPFNTLHSREYQGHKKKVHSVAWNCAGTKLASGSVDQTARVWHIEPHGHGKVKDIE
LKGHSDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGT
HIAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGDMFFLTTGNGTVEVLAYPSL
KAVGTLMAHTAGCYCIAIDPAGRYFAVGSADSLVSLWDIKEMLCVRTFTKLEWPVRTISF
NHTGEYIASASEDLFIDISNVHTGRPVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQT
DEGVFRIFGFESA
NT seq 942 nt   +upstreamnt  +downstreamnt
atggaagataccatacccttcaacacactccatagtagagagtaccaaggccataagaaa
aaggtgcattcggtggcatggaattgtgcaggcacgaaactggcctccggttctgttgat
cagacagcccgagtttggcacattgaacctcatggccatggtaaggttaaagatattgag
ctaaaggggcattctgatagtgtagatcagctatgctgggatccgaaacatgcagatttg
attgcaacagcatcgggtgacaagactgttcgtttgtgggatgctcgtagtggaaaatgc
tcgcagcaagcagaacttagtggggaaaacattaatatcacttataaacctgatggaact
cacatcgctgttggtaatagggatgacgagctaacaatactggatgtacgcaagtttaag
cccatacataagcgcaagttcaactatgaagtgaatgagatagcatggaacatgacgggt
gatatgttctttttaactactgggaacggtactgttgaagtgcttgcgtatccatcgctc
aaagcagttggtaccctcatggctcatacagcaggatgctattgtattgcgattgaccca
gcgggaaggtattttgctgtgggaagtgccgactctttagtcagcctgtgggatataaag
gagatgctttgtgtccgtacattcacaaaactcgagtggcctgttcggactattagtttc
aatcacactggagaatatattgcttctgcaagcgaggacttgttcatcgatatttccaat
gttcacacaggccgaccagtccaccaaattccttgtcgagcagccatgaacagcgtggag
tggaatcccaagtacaacttacttgcatatgctggagacgacaagaacaaataccagacc
gatgaaggtgtttttcgaatatttggctttgagagcgcctag

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