Salvia miltiorrhiza (redroot sage): 131003120
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Entry
131003120 CDS
T09291
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52C-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
smil
Salvia miltiorrhiza (redroot sage)
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smil03019
]
131003120
03041 Spliceosome [BR:
smil03041
]
131003120
03036 Chromosome and associated proteins [BR:
smil03036
]
131003120
Enzymes [BR:
smil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131003120
Messenger RNA biogenesis [BR:
smil03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
131003120
mRNA cycle factors
Common to processing body (P body) and stress granule
131003120
Spliceosome [BR:
smil03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
131003120
Chromosome and associated proteins [BR:
smil03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
131003120
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
ResIII
Motif
Other DBs
NCBI-GeneID:
131003120
NCBI-ProteinID:
XP_057785580
LinkDB
All DBs
Position
Unknown
AA seq
600 aa
AA seq
DB search
MPISYCSDSNGKASAGGGVARTSYVPPHLRNRPPSAEAASAPISHSGGNLQFQSAGPRND
RNGGGSSRVGGGGGGGGGGAWNNRGNGWDRGREREANPFRADLDTEQEFGSQENTGINFD
AYEDIPVETSGRDVPPPVNTFAEIDLGEALNLNIKRCKYSKPTPVQRYAIPISLCGRDLM
ACAQTGSGKTAAFCFPIISGIMRSSRSAPSAPSFSRVACPLALILSPTRELSVQIHEEAR
KFAYQTGVRVVVAYGGAPINMQLRDLERGVDILVATPGRLVDLLERARVSLQMIKYLALD
EADRMLDMGFEPQIRRIVQQMDMPPAGVRQTMLFSATFPKEIQRLAADFLSTYVFLAVGR
VGSSTDLIVQRVEYVLETDKRSHLMDLLHAQIANGDQGKQALTLVFVETKKGADALEHWL
CINGFPAASIHGDRTQQEREYALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPND
IDDYVHRIGRTGRAGKTGLATAFFNDNNSSLARPLSDLMQEANQDVPAWLSRFAARSSYG
KNRRGGGPGGRFGGRDFRRDTSYNRGGMDYYGAGHVSNGYSASSVYAGGHGPATVASAWD
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgccgatatcatattgttctgattctaatgggaaagcttctgctggtggaggtgtagct
cgaacaagttatgttccgccacatcttaggaataggcctccctcagctgaagcagcctca
gctccaatttcacattccggtggcaacctccaatttcaatcggctggtccaaggaatgat
cgaaatggaggtggtagtagccgtgttggtggtggtggtggtggtggtggtggtggtgct
tggaacaatagagggaatggttgggatcgcgggagggaaagagaagctaatccttttcga
gctgacttagacacagagcaggaatttgggtctcaggagaatacagggatcaattttgat
gcttatgaggatattccggttgagacgagtgggagagatgttcctcctcccgtgaataca
tttgctgaaattgatttaggtgaagctctcaatctcaacattaagaggtgcaagtactca
aaaccaacacctgttcagcggtatgctataccaatatcactttgtggtcgggatctaatg
gcgtgtgcccagactggttctgggaagacggctgcattttgcttcccaatcataagtgga
atcatgaggtctagcagatcagctcctagcgcgcctagtttttcacgtgtggcatgtccc
cttgctctcatcctttctccaaccagggagctttctgtccaaattcatgaagaagctagg
aagtttgcctaccaaactggtgtcagggtggtggttgcttatggtggtgctcccataaac
atgcagctccgtgatcttgaaagaggtgttgacatacttgttgcgactcctggacggttg
gtggatttgttggaaagggcaagagtctctttgcaaatgataaagtatttagcactagac
gaggcagatagaatgttggacatgggttttgaacctcaaataaggagaatcgtgcaacaa
atggacatgccacctgctggtgtaagacaaacaatgctgtttagtgccacttttccaaaa
gagattcagaggctggctgcagattttctatcaacttatgtgtttctggctgttggaaga
gttggttctagtactgatttgattgtccaaagagttgaatatgtgctcgagactgacaaa
agaagccacctgatggaccttctacatgcgcagatagctaatggcgaccaaggaaagcaa
gctctcacactggtttttgtagaaacaaagaagggagctgatgcacttgaacattggctt
tgcatcaatggcttccctgccgcttctattcatggtgacagaactcaacaggagcgagag
tacgccttaaggtctttcaaaagtggcaaaacaccaattctggttgcaacagatgtggca
gcacggggtcttgacatccctcatgttgcacatgttgtcaactttgatcttcctaatgat
attgatgactatgtccatcgcataggtagaactgggcgtgcaggcaagacagggttggct
actgccttcttcaacgacaacaattcctcgttggcgaggccattgtctgatttgatgcaa
gaagcaaaccaagacgtcccggcttggctctcccgctttgcagcccggtcttcctatggc
aagaaccgtcgtgggggagggccaggaggaagatttggtgggcgggatttccggagagac
acctcctacaaccgcggtggaatggactactatggcgcggggcacgtgagcaacggatat
agtgcgtctagtgtctatgctggaggccatggccctgctactgtggctagcgcatgggac
taa
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