Salvia miltiorrhiza (redroot sage): 131004906
Help
Entry
131004906 CDS
T09291
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131004906
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smil03019
]
131004906
03041 Spliceosome [BR:
smil03041
]
131004906
03009 Ribosome biogenesis [BR:
smil03009
]
131004906
03016 Transfer RNA biogenesis [BR:
smil03016
]
131004906
Enzymes [BR:
smil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131004906
Messenger RNA biogenesis [BR:
smil03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
131004906
Spliceosome [BR:
smil03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
131004906
Complex C
U4/U6.U5 tri-SnRNP related factors
131004906
Ribosome biogenesis [BR:
smil03009
]
Eukaryotic type
Pre-60S particles
Helicases
131004906
Transfer RNA biogenesis [BR:
smil03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
131004906
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
131004906
NCBI-ProteinID:
XP_057787657
LinkDB
All DBs
Position
Unknown
AA seq
996 aa
AA seq
DB search
MDGSPTSIKRKQPEEGSQEQQENQVQDSASKRRSLSRTCVHEVAVPSGYVSTKDESIHGT
LADPIYNGERAKTYPFKLDPFQEVSVSCLERNESVLVSAHTSAGKTAVAEYAIAMAFKEK
QRVIYTSPLKALSNQKYRELSQEFSDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEV
LKEVAWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATMSNATEFAEWICNIHKQ
PCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDENEQFKEGNFLKLQDTFNKQNPVDGSKSA
NSKGSGRIAKNGNASGGSDIYKIVKMIMERKFQPVIIFSFSRRECEQHAMSMSKLDFNTP
EEKDVVGEVFRNAILCLSEEDRNLPAIELMLPLLQRGIAVHHSGLLPIIKELVELLFQEG
LVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSHRYIASGEYIQMSGRAGRRGKDERGI
CIIMVDDKMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIRNSFHQF
QHEKALPDIGKKVSQLEQEAAVLDASGEAEVAEYHRLKLELAQLEKKMMAAITQPERVLS
FLLPGRLVKVREGGTDWGWGVVVNVVKKPQAVSSSMPAALASSRGNNYIVDALLHCSMGT
SENGSQPKPCPPRPGEEGEMHVVPVQLPLLSAVSKLRISVPSDLRPKESRHNVLLAVQQL
EKRYPQGFPKLNPVKDMGVDEPEFVELASQIEELEQKLFTHPLHKSQDVHQISSFQRKAE
VNHEIQQLKSKMRDSQLQKFRDELKNRSRVLKRLGHIDGDGVVQLKGRAACLIDTGDELL
VTELMFNGTFNDLDHHQIAALASCFIPGDKSSEQIHLRAELAKPLQQLQDSARMIAEIQR
ECKLEINVDEYVEASIRPFLMDVIYCWSKGASFADVIQMTDIFEGSIIRLARRLDEFLNQ
LKGAAHAVGESGLEEKFTAASESLRRGIMFANSLYL
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atggacggttctcctacatccattaaaaggaaacaaccagaagagggttcacaagaacaa
caggaaaaccaggtgcaagactctgcctctaagaggcgtagcttatctaggacttgcgtg
catgaggtggcagtgccaagtggatatgtttcaaccaaggatgaatcaattcatggcacc
cttgcagatcccatatataacggggagcgagctaagacctacccattcaagcttgatcct
tttcaggaggtttctgtttcttgtttggagagaaatgagtctgttttagtctctgctcac
acttctgctgggaaaactgcagttgcggaatatgcaattgccatggcttttaaagagaag
caaagagtcatatatacttctcctctgaaagctttgagcaatcagaaatacagagagttg
agtcaagagttttcagatgttggattgatgacaggtgatgtcacactgtcacctaatgca
agttgtttggtgatgactacggaaatcctcaggggaatgctttataggggttctgaggta
ctgaaggaagttgcttgggtcatatttgatgagatacattacatgaaggatcgtgaaaga
ggtgtagtttgggaagaaagtattgtcttcttgccccctgccatcaagatggtttttctt
tcagctactatgtcaaatgcaactgagtttgccgaatggatatgcaatatacacaaacag
ccttgtcatgtggtctacacagattttaggccgacacctctacaacactatgtgtttcct
gtgggtggatctggtttgtatcttgtagttgatgagaacgagcagtttaaagagggtaac
tttttgaagctccaggatactttcaataagcaaaatcctgttgatgggagcaagagcgcg
aattccaaaggcagtggcagaattgctaaaaatggaaatgcttcaggcggttctgacata
tacaaaattgtcaagatgataatggaacggaaattccaaccagtcataatttttagtttt
agcagaagagagtgtgagcaacatgccatgtccatgtccaaacttgattttaatactcca
gaggagaaagatgttgtgggggaagtgtttcgaaatgctatcctatgcttgagtgaggag
gatagaaatttgcctgccattgaattaatgttgccattacttcagcgaggcattgccgtt
catcattctggtttgcttcctattatcaaagaacttgtagagcttctcttccaagaaggg
cttgttaaggccctatttgccacagaaacgtttgccatggggttgaacatgcctgcaaaa
actgttgttttcacaagtgtgaaaaaatgggacggtgacagtcatcgttatatcgcatct
ggtgagtatatccagatgagtggtagagctggacgtcgtggtaaagatgagcggggtatc
tgcattataatggtcgatgataagatggagatgaatacacttaaagacatggttttgggc
aaaccagcacctttggtcagtactttcaggttgagctattactcaattctaaatttaatg
agtcgtgccgagggacaattcacagctgagcatgttatcagaaactccttccatcaattt
cagcacgagaaggctttacctgacattgggaaaaaagtctcacagctcgaacaggaagct
gctgtgcttgatgcttctggagaggctgaggtggctgagtatcatcgacttaagcttgag
ttggcccaacttgaaaagaaaatgatggcagcaataacacaacctgaaagagttctctct
ttccttctacctggtagactggttaaggtaagagaaggaggaacagattggggttggggc
gttgttgtcaacgtggttaagaaaccacaagctgtatcaagttctatgccagctgcactt
gcttcttcacgtggtaacaactatattgtggatgccctgctccactgctctatgggcaca
agtgaaaatggttctcaaccaaaaccttgtcctcctcgtccaggagaagaaggtgaaatg
catgtggttcctgttcagttgcctcttctttctgcagttagcaagcttagaatatctgtt
ccgtccgacttgcggccaaaagaaagtcggcataatgttctccttgctgtgcaacagctt
gaaaagcgctatccccaaggttttccgaagcttaatccagtgaaggatatgggagttgat
gagccagaatttgttgagttggctagccaaattgaggagcttgagcagaaattgttcact
catccactgcacaagtcgcaagatgtacatcagatttcaagtttccagagaaaagcagaa
gtcaatcatgaaattcaacagctaaagtcaaaaatgcgtgattctcagcttcaaaaattt
cgcgatgaacttaagaatcgatcacgggttctgaaaagactgggccatattgatggtgac
ggcgttgttcagttgaagggacgtgcagcttgccttatagacactggagatgagctcctt
gtcacagaattgatgttcaatggtaccttcaatgatcttgatcatcatcaaattgcagct
ctagctagttgctttattcctggggacaaatcgagtgaacagatacatttaagagctgaa
cttgctaaaccattgcaacaacttcaagatagtgccagaatgatagctgagatacaacgt
gagtgtaaactcgaaataaatgtggatgaatacgttgaagcatcaattagacccttcttg
atggatgtgatttattgttggtcaaagggagcatcttttgcagatgttattcaaatgact
gatatttttgaaggtagcatcataaggttggctagaaggcttgatgaatttttaaatcag
ttgaaaggtgctgctcatgcggttggcgagtctggtttagaggagaaatttacagccgct
agcgaaagccttcgtcgggggataatgtttgcgaattcattatatctttga
DBGET
integrated database retrieval system
