Salvia miltiorrhiza (redroot sage): 131005146
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Entry
131005146 CDS
T09291
Name
(RefSeq) autophagy-related protein 16 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil04136
Autophagy - other
smil04145
Phagocytosis
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
131005146
04136 Autophagy - other
131005146
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smil04131
]
131005146
03029 Mitochondrial biogenesis [BR:
smil03029
]
131005146
Membrane trafficking [BR:
smil04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
131005146
Others
Specific organelles associated proteins
Auto phagosome
131005146
Mitochondrial biogenesis [BR:
smil03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
131005146
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_IFT122_1st
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
EIF3I
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
WD40_Gbeta
WDR55
Beta-prop_WDR90_POC16_2nd
DSE1_N
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_SCAP
ANAPC4_WD40
ATG16
Beta-prop_TEP1_C
Beta-prop_VPS8
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_WDR41
Beta-prop_RIG_2nd
CFAP251_N
ASA1
Beta-prop_IFT140_1st
Beta-prop_HPS5
Beta-prop_ACSF4
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_Aladin
WDR54
Beta-prop_NWD2_C
WD40_RFWD3
PAC11
Beta-prop_NOL10_N
Beta-prop_WDR19_1st
Beta-prop_WDR35_TULP_N
NBCH_WD40
eIF2A
Beta-prop_EIPR1
Beta-prop_Nup120_160
Beta-prop_RIG_1st
DUF7165
Beta-prop_NUP159_NUP214
Small_EgtBD
Beta-prop_IP5PC_F
Cytochrom_D1
PQQ_2
Rab11-FIP3
ZapB_rel
Motif
Other DBs
NCBI-GeneID:
131005146
NCBI-ProteinID:
XP_057787946
LinkDB
All DBs
Position
1:66311786..66315489
Genome browser
AA seq
509 aa
AA seq
DB search
MAQGDVAMEAIKHALKALRKRHLVEEGAHSHAFIALSRPIVSQGSEWKEKAENLELELQQ
CYKAQSRLSEQLVVEVAESRTLKALMQEKETAISELQNELTQARDECSRLAVLLEEKTKA
LELLISEHQEVKGQLEATTLRADNAEAENKMLIDRWMLEKMKDAERLNEANALYEDMVDR
LKQSSMEHLAHQQVDGVVRRCEEGAEYYVESTVPSTCKQRIPAHDGGCTSILFEHNSSKL
VSGGQDKAVKMWDANTGSSTRTLYGCLGTVLDVCITHDNKSVVAASSSNTLYVWDVSSGR
VRHTLTGHVDKVCAVDVSKVSNRNVVSAAYDRTIKVWDLQKGYCVNTLLCYSNCNALCFS
MDGQTICSGHVNGNLRLWDIQTGKLLSEIAAHSSAVTSLSLSRNGNMLLSSGRDNLHNLF
DTRTLEICATLRGNGSGLASNWSRTCMSPDDGYVAAGSADGSVEIWSVANAKIVSTLKEH
TSPVLCCAWSNLGKPLATCDKNGNICIWS
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaaggagatgtagcaatggaagcaataaaacatgctctgaaagctctgagaaag
cggcatttagtggaagagggtgcgcattcacatgcttttattgcgctatctcgcccgatt
gtgtctcaggggtcagagtggaaagagaaagctgaaaatcttgaattggagctccagcaa
tgctacaaagcccagtctagattatctgaacaacttgtggtggaagttgccgaatccaga
actttgaaagcactaatgcaagagaaagaaactgcgatatctgagttgcaaaatgagctc
actcaagcaagggatgaatgctcccggttagctgtgctgttggaggaaaagaccaaggct
ctggaactgttgataagtgagcaccaagaagttaaaggacaactcgaggcaaccactctt
agagctgacaatgccgaagcggaaaacaagatgctaattgaccgttggatgttggaaaag
atgaaagatgctgagcgtctaaatgaggcaaatgctctttatgaagatatggtggatcgc
ctcaagcaaagcagcatggaacatcttgcccaccaacaagttgatggtgtagtccgccgg
tgtgaagagggtgcagagtactatgtcgagtcaaccgtcccctctacatgcaaacagagg
atccctgctcatgacggtggctgcacctccatattgtttgagcacaactcctctaaattg
gtcagtggaggacaagacaaagctgttaaaatgtgggatgcaaacacgggatcatcaact
cggacactttatggttgtctgggaacagttctcgatgtctgcattacccacgacaacaaa
tctgttgttgccgccagcagttcaaatactttgtacgtatgggacgtaagctcaggtcgt
gtacgacataccctcactggccacgtagacaaggtctgtgccgtggatgtcagcaaggtg
tctaaccgcaatgttgtcagtgcagcttatgatcgaaccataaaagtttgggatcttcag
aaaggctactgcgtcaacactcttctatgctacagcaactgcaatgccctctgttttagt
atggatgggcagaccatttgctccggccacgtcaatgggaatctccgactatgggatatt
cagacagggaaacttctcagtgagattgctgcacattcttctgcagtaacatctttatca
ctgtccagaaacgggaacatgttgctgtcaagtgggagggacaacttgcacaatctattc
gacacgcgcactctcgaaatctgtgcaactttgagaggaaatgggagcggactggcatct
aattggagcagaacttgtatgagtcctgacgatggttatgtcgctgcaggatctgctgac
gggtctgtagaaatctggtccgtcgcaaatgccaaaattgtgagcacgctgaaggagcat
acatctcccgtgttgtgctgcgcttggagtaatcttggtaagcctttagcaacttgtgat
aagaatggtaacatttgcatttggtcttga
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