Salvia miltiorrhiza (redroot sage): 131006670
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Entry
131006670 CDS
T09291
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131006670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smil03041
]
131006670
03009 Ribosome biogenesis [BR:
smil03009
]
131006670
Enzymes [BR:
smil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131006670
Spliceosome [BR:
smil03041
]
Complex A
U1 snRNP components
U1 related factors
131006670
Complex B
131006670
Ribosome biogenesis [BR:
smil03009
]
Eukaryotic type
Pre-60S particles
Helicases
131006670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
131006670
NCBI-ProteinID:
XP_057789815
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All DBs
Position
1:14726681..14734421
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AA seq
563 aa
AA seq
DB search
MSYVPPHLRNSSANPASAAKTLVNGNSDNFHSKLNGSYSQFASAKTNNNNGNSLNLWNAG
FRGSGNHASSVPEPVAPQWKPSDRVMQLNAEQVEEVCMRLNVDATVPPDSEPAPAPIESF
TDMNLHASIMKDIAFHGYTTPTSIQAQAMPIALIGRDLLGCAETGSGKTAAFTIPMIQHC
LAQPPIRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLDSFKTAIVVGGTNISEQRSELR
AGVNIVVATPGRFIDHLQQGNTSLSRISFVILDEADRMLDMGFEPQIREVMQNIPKKHQT
LLFSATMPVEIEELAQEYLTDPVRVKVGKVSSPTANVSQILEKVPENEKIDRLLDMLVEA
AAHSEKCSHSFPLTIVFVERKSRCDEVAEALIQQGLQAASLHGGRSQSEREAALRDFRHG
PTRILVATDVASRGLDVTGVAHVINLDLPKTMEDYVHRIGRTGRAGSTGQATSFYTDRDM
FLVAQIKKAIQDVESGNSLTFATGKTARRKEREAIAASKDQKLTLSNLSLVGSAAINVED
KYRHMIVPAVSRKEGSADDAWDD
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatgttcctcctcacctgagaaactcttccgccaaccccgcctctgccgccaaa
accctagtaaacggaaactccgataatttccactccaagctcaacggctcttactctcaa
tttgcttccgctaaaaccaacaacaacaatggcaactcattaaatttgtggaatgccggt
tttcggggctccgggaatcacgcctcatcggtaccggagccggtggctccacagtggaag
ccgtccgaccgcgttatgcagctgaatgcggaacaggtcgaggaggtctgcatgaggctt
aatgttgatgctacagttccaccagattcagaacctgcaccagctcctatcgagtcattc
actgacatgaatttgcatgcaagcatcatgaaagacatagcatttcatggatatactacc
ccaacttcaattcaagctcaggccatgccaattgctcttattggaagggatcttttgggt
tgtgcagaaactggtagtggtaaaacagctgcattcaccatacctatgatacagcattgc
ctggctcagcctcctattcgacgaggagatggacctttggcattagtattagccccaacc
agagagctggctcaacaaatagaaaaagaagtgaaagccttcagtcgatctttggactca
tttaaaactgcaattgttgtgggcggaacaaacatttctgagcagaggtctgagctgcga
gcaggggttaatatagtagttgctactcctggaagatttattgatcatcttcaacaagga
aatacttctttatcgaggatatcatttgtcattctggacgaagctgatagaatgcttgac
atgggatttgagcctcagataagagaggtgatgcaaaatattcccaagaagcatcaaacc
ttgctgttcagtgctacaatgccagtggagattgaagagttagcacaggaatacttaaca
gatccagtgcgggtaaaagttggaaaagtcagcagcccaacagcaaatgtatcccaaatt
ttggagaaggtaccagaaaatgagaagattgacaggctgctagatatgcttgttgaggca
gctgcccattctgaaaagtgtagccactcattccccttgaccatcgtatttgtggaacgg
aagagcagatgtgatgaagttgctgaagcattgattcaacaaggtctgcaagcagcttct
cttcatggtggtcgtagtcaaagtgaaagagaggctgctctccgtgattttagacatggt
cctactaggatactggttgctacagatgttgcatcgcggggattggacgtcaccggggtt
gctcatgtcatcaatctggatcttccaaagaccatggaagattatgtacaccggattgga
aggactggtcgtgcaggatcaacgggccaagctacatcattttatactgatcgtgacatg
tttcttgtagctcaaataaagaaagcaatccaagatgtcgagtctggtaattctttaact
tttgcaacgggaaagactgcaagaagaaaggagagggaagctatagctgcttcaaaagac
caaaagctcacactatcaaacctctcattggtgggttcagcagcaatcaacgtggaggac
aaatataggcatatgatcgtccctgcagtaagcagaaaagagggttctgctgacgatgcg
tgggacgactga
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