Salvia miltiorrhiza (redroot sage): 131006823
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Entry
131006823 CDS
T09291
Name
(RefSeq) protein CHROMATIN REMODELING 5 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
smil
Salvia miltiorrhiza (redroot sage)
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smil03021
]
131006823
03036 Chromosome and associated proteins [BR:
smil03036
]
131006823
Transcription machinery [BR:
smil03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
131006823
Chromosome and associated proteins [BR:
smil03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
131006823
SLIK complex
131006823
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HTH_CHD1_Hrp3
Chromo
CHD1-like_C
HDA2-3
ResIII
DEAD
SWI2_SNF2
Chromo_MIT1
OAM_alpha
Allexi_40kDa
Motif
Other DBs
NCBI-GeneID:
131006823
NCBI-ProteinID:
XP_057789963
LinkDB
All DBs
Position
1:complement(17917246..17935036)
Genome browser
AA seq
1707 aa
AA seq
DB search
MAFSRNSSDEAVEQIALNERSHLHQLAIDSSRLKENAMINNEEMTDLTPDNNAGEDSRSN
LRIGHDQPPVRGTTMGGKWGSTFWKDYPPARTSHGPLESGEESKSGSEYKGSEVEEESDG
VEDRMESEYDDITHKDLTGKGHQTVPADEMLSDEYYEQDGDEPPNESVNHYRAMNHSHGY
SSKPPSRPAPSNISRKLKGSKANKYSDEDADYEDDDDDEDEDDPDDADFNPDYGARSRER
RIKDKDDGWDAEESDEEDNVDDDDLDVSDEDDPYFKKSRAKQSSKSGRNLKSTREFKSIA
SSTRRKKGRASFEDDDEESSADDSENVSDEDFRSSRRGAQAHRKNGGRSAAVSLSSRRNE
LRTSGRSVRKVSYVESDGSEDIDEVKKKNQKKEDEEEDGDAIEKVLWHQRRGTAEEALRN
NKSTDPVLLSYLFDSELDWSEMEFLIKWKGQSHLHCQWKSFSELQNLSGFKKVLNYTKKV
MEDVKYRRMVSREEIEVNDVSKEMDLDIIKQNSQVERVIAERVVNDSSGDVVSEYLVKWQ
GLSYAEATWEKDIDISFAQDAIDEYKSREAASMVPGKTVDFQRKKIKGSLRKLDEQPEWL
KGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNSQQIQGPFLVV
VPLSTLSNWAKEFRKWLPEMNVIIYVGTRASREVCQQYEFYNDKKAGRSTNFDTLLTTYE
VLLKDKAILSKIRWSYLMVDEAHRLKNSEASLYMALSEFSTKNKLLITGTPLQNSVEELW
ALLHFLDPDKFRSKDDFVQKYKNLSSFNETELTNLHMELRPHILRRVIKDVEKSLPPKIE
RILRVEMSPLQKQYYKWILERNFQDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHG
YGGDTNSLGSTKLERVILSSGKLVILDKLLTRLHETNHRVLIFSQMVRMLDLLAEYLSLK
GFQYQRLDGSTKAELRQQAMEHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWN
PQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLE
KKETKKGSTFDKNELSAILRFGAEELFKEEKNDEESKKRLLGMDIDEILERAEKVEDKAT
EGEEGHELLSAFKVANFGSTEDDGTFWSRMIKPEAVSQAEDALAPRAARNIKSYAEAIPS
ERTNKRKKKGVETQERMSKRRRADSVYSPPVLEGATAQVRGWSYGNLPKRDATRFFRAVK
KFGNDSQISLIAAEVGGTVEAAPTEAQIELYDALIDGCREAIKGEILDPKGPLLDFFGVP
VKADDLLGRVEELQLLAKRINRYEDPLSQFRALAYLKPSTWSKGCGWNQKDDARLLLGVY
YHGFGNWEKIRLDERLGLTKKIAPVELLHHETFLPRAPQLKERASQLLEMEVVAVGGKNS
TLKVSRKNGKKQKDALIVSGGKGRQGKPTSPRGNVQMNKRRAPKSQKMEPLVKEEGEMSD
NEEVYEQFKEVKWREWCEDVMVDEEKTLKRLQKLQSTSADLPKEKVLSKIRNYLQLIGRR
VDQIVSEYEQESYRQERMTTRLWNYVSTFSNLSGERLQQIYSKLKQEQGIGPSHINGSAT
GQTTAFMHRDLDVEKFEAWKRKKRAEADSSHIQQHPYQRPPNNGTWLPDPTSSGILGPPP
SDNSRQLNNGRPYRMQQSRQGFSSGIK
NT seq
5124 nt
NT seq
+upstream
nt +downstream
nt
atggcgttttccagaaattcctcagatgaagcagtggaacagattgcattgaatgagaga
agtcatttgcatcagctggccattgatagcagtaggcttaaggagaatgctatgatcaat
aatgaagaaatgacagatcttacaccagataacaatgcgggtgaagatagtagaagtaat
ctcaggataggacatgaccagcctcctgttaggggaacgactatgggggggaagtggggt
tcaactttttggaaggactacccgccggcaaggacgtcccatggaccattggagtcaggg
gaggagtcgaagagtgggtcagagtataaaggctctgaagtggaggaggagtctgatgga
gtagaggatagaatggagtctgaatacgatgacatcacacataaagatttgacagggaaa
ggacatcagactgttcctgctgatgagatgttgtctgatgagtactatgagcaggatggc
gatgagccaccaaatgagtctgtgaatcattatagggcaatgaaccattcacatggatat
agttcgaagccgccatctcggcctgctcccagcaatatttcacggaaattaaagggatcg
aaagccaacaaatacagtgatgaagatgcagattatgaagatgacgatgatgatgaagat
gaagatgaccctgatgatgctgacttcaatcctgattatggggcaagaagcagggagaga
cggatcaaggataaagatgatggttgggatgctgaagaatctgatgaggaggataatgtt
gatgatgacgatttggatgtctcagatgaagatgatccctactttaagaaaagtagggca
aaacaatcaagtaaaagtggccgaaatttgaagtcaacccgagaatttaagtcaattgca
tcatccactcggagaaagaaaggtagagcttcttttgaggatgatgacgaagaatcttct
gctgatgactcagaaaatgttagtgatgaggattttagaagttcaaggagaggtgcacaa
gcacacagaaagaatggtggtcgatctgctgctgttagcctttctagtaggagaaatgaa
ctacgaacatcaggtcgttcagtgcggaaagtatcatatgttgaaagtgatggaagtgaa
gatattgatgaagtaaagaaaaagaatcaaaagaaggaagatgaagaagaagatggagat
gcaattgagaaggtgttatggcatcaacgaaggggcactgctgaagaagctttgaggaat
aataaatcaacagaccctgttcttttgagctatttgtttgattccgaactagattggagc
gagatggaatttctgataaagtggaaaggccagtcacatttacattgtcaatggaaatca
ttttctgagttgcagaatctcagtggttttaagaaggttttgaattataccaaaaaagta
atggaagatgtgaagtaccggaggatggtgtcccgggaggagattgaggtaaatgatgtc
agcaaggagatggacctggatattatcaaacaaaacagtcaggtggagagagtaatagcg
gagcgagttgttaacgatagttcgggtgatgtagtttcagaatatttggtcaagtggcag
ggactgtcgtatgctgaagctacttgggaaaaggacatagatatttcatttgcccaagat
gctattgatgagtacaagtctcgagaggccgcgtcaatggttccagggaagactgttgat
tttcagcgcaagaaaatcaaaggaagtctcaggaagcttgacgagcagcctgagtggctg
aaagggggcaaacttcgagactatcagcttgaaggtcttaactttcttgttaacagctgg
agaaatgataccaatgtaattttagctgatgaaatgggtcttggtaaaactgttcagtca
gtttcaatgcttggttttctgcagaattctcagcaaattcaaggaccatttcttgttgtt
gttcctttatctaccttgtctaattgggcaaaagagtttagaaagtggttgcctgagatg
aatgttattatatatgttggaactcgtgctagccgtgaggtctgccagcaatatgagttt
tacaatgacaaaaaagcaggcaggagtactaattttgatactcttttgactacctatgaa
gtattattgaaggataaagccattctctcaaaaattaggtggagctacctgatggttgat
gaagcacataggttaaagaatagcgaggcatctttgtatatggcattatcagaatttagc
acaaagaacaagttgctaattactggcactcccctgcaaaacagtgttgaagagctatgg
gctttgcttcattttctcgatcctgataagtttaggagcaaggacgactttgttcaaaag
tacaagaatcttagctccttcaatgaaacagagcttacaaatcttcacatggaattgaga
cctcacattcttcgaagagttataaaagatgtggagaagtctttgcctcctaagattgaa
cgcatcctgagggttgagatgtctccacttcagaaacagtattataagtggattttagaa
cgtaacttccaagatttgaataaaggagttcggggaaatcaggtttcacttttaaatatt
gtggtggagctgaagaaatgctgtaatcacccatttttgtttgagagtgcagaccatggt
tatggtggggatacgaattccctaggcagcacaaaactcgaacgtgttattttgagtagt
ggaaagctggtcatactagataaactgctgactagattgcatgagaccaaccaccgtgtt
ctaatattttctcagatggttaggatgttggatttacttgccgagtatctttctctcaaa
gggttccaataccaaagacttgatggtagtacaaaggctgagttacgtcagcaggctatg
gaacattttaatgctccggggagtgaggacttctgttttcttctttcgactcgtgctggt
ggcttgggcattaatcttgcaactgcagacacggttatcatatttgattcagactggaat
ccgcaaaatgacttacaggcgatgagccgagctcatagaattgggcagcaagaagtagtt
aacatttaccggtttgttactagcaagagcgttgaggaagatattttggagcgggctaaa
aagaagatggttctggaccatttggttattcaaaaactgaatgcagagggcagactggag
aaaaaagaaacgaaaaaaggaagtacttttgataaaaatgagctttcagcaattctgagg
tttggggctgaagaactctttaaggaagaaaagaatgacgaggaaagcaagaaaaggctt
cttggtatggatattgatgagattcttgaaagggcagagaaggttgaagacaaagccaca
gaaggagaggaaggtcatgaactgttgagtgcttttaaggttgccaatttcggtagtact
gaagatgatggaactttctggagccggatgataaagccagaagctgtttcacaagctgaa
gatgctttagctcctcgagcagcacggaatattaaaagttatgcagaggctataccctct
gaaaggactaataagaggaaaaagaaaggagttgaaactcaggaaagaatgtcaaagaga
cgaagggcagattctgtttactctcctcctgtgcttgaaggtgctactgcccaagtgaga
ggatggtcttatgggaatttacctaaaagagatgcaactcggttctttcgtgcggtcaag
aagtttggaaatgatagccagataagcttgatagctgcagaagttggtggaacggttgaa
gctgctcccactgaagctcaaattgagctttatgatgctttaattgatggttgtagagaa
gcaatcaaaggagagattctggatcccaagggtccacttttggatttcttcggtgtacct
gtgaaggctgatgacctcttagggcgtgttgaagaacttcagttgcttgccaagcggatt
aaccggtatgaagatcctctgtctcaattcagagcactagcatatctcaaaccatccacg
tggtctaaaggttgtggctggaaccagaaggatgatgcaaggctgctgcttggagtttac
tatcatggttttggcaactgggaaaagataaggttggatgaaagacttggtcttacaaag
aagattgctccagtggaacttctgcatcatgaaacattcctacctcgagccccacaactg
aaagagcgagcttcacaacttctggaaatggaagttgtggctgttggtggaaagaattct
actttgaaagttagccgcaagaatggaaaaaagcagaaagatgctcttattgtatcaggc
ggaaagggaagacaagggaagcctacttctcctagggggaatgttcaaatgaacaaaaga
agagctcccaaatcccagaagatggagcctttagtcaaagaggaaggcgaaatgtccgat
aatgaggaagtttatgagcagttcaaggaagtaaagtggagggagtggtgtgaagatgtc
atggtagatgaggaaaagactcttaaacgtctccaaaagctgcagtcgactagtgcagat
ttgcccaaggagaaggtgctttccaaaattcggaattatttgcagcttatcggtcggagg
gttgaccaaattgtttcagagtatgagcaggagtcttataggcaagaaaggatgaccaca
agattgtggaattatgtatctacgttttcaaacttgtccggtgagagacttcagcaaatt
tattctaaacttaaacaggagcaaggcataggaccatcccatatcaacggctctgctact
gggcaaacgacagcgtttatgcatagggatcttgatgtggagaaatttgaagcttggaaa
cgaaaaaaaagagcggaagccgattcttctcatattcagcagcatccgtaccaaagacct
ccaaataacgggacctggttacccgatcccacttcttctgggattctcgggccgccacca
tctgacaacagcagacagttaaataacgggaggccttacaggatgcagcaatcaagacag
ggtttctcatctggtatcaagtag
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