Salvia miltiorrhiza (redroot sage): 131009192
Help
Entry
131009192 CDS
T09291
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03020
RNA polymerase
smil03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
131009192
09124 Replication and repair
03420 Nucleotide excision repair
131009192
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smil03021
]
131009192
03400 DNA repair and recombination proteins [BR:
smil03400
]
131009192
Enzymes [BR:
smil01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
131009192
Transcription machinery [BR:
smil03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
131009192
DNA repair and recombination proteins [BR:
smil03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
131009192
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
131009192
NCBI-ProteinID:
XP_057792427
LinkDB
All DBs
Position
2:73745541..73756597
Genome browser
AA seq
1196 aa
AA seq
DB search
MYGGGGGGEEEAYAAAEVDDGADEISQEDTWTVISSYFEEKGLVRQQLDSFDEFIQNTMQ
EIVDESAHIEIRPESQHNPGRSSEFAETIYRISFGQIYLSKPMMTESDGETNTLYPKAAR
LRNLTYSSPLYVDVTKRVIRKGYDCEEVIETQEFTKIFIGKVPIMLRSSYCSLYNLSEKD
LMEMGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSIAEAQN
KAPSGMFVRMLSRPGAKGGSSGQYIRATLPYIRTEVPIIIVFRALGFIPDKEILEHICYD
FNDAQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAREILQREMLPHV
GIGEGHEHKKAYYFGYVVHRLLICALGRRAEDDRDHYANKRLDLAGSLLGGLFRMLFRKL
TRDVRSYVQKSVDNGKDVNLQFAIKAKTVTSGLKYSLATGNWGQANAAGTRAGVSQVLNR
LTFASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYI
TVGSAANPILEFLDEWGTENFEEISPAVIPQATKTFVNGCWVGIHRQPELLVRTLRQLRR
QVDVNTEVGIVRDIRLKELRLYTDYGRCSRPLFIVEQQRLHIKKSDILALQQRETPEEYG
WNDLVRKGFIEYVDTEEEETTMISMTVNDLVRSRRNPDDAYSETYTHCEIHPSLILGVCA
SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLH
FRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKED
FGRPNRDSTMGMRHGSYDKLDDDGFAPPGTRVSGDDVIIGKTTPVTQEEAQGKSARFTSK
DHSTSLRHSETGIVDQVLLTTNADGLRFVKIRMRSVRIPQIGDKFSSRHGQKGTIGMTYT
QEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI
SQALHKCGYQMRGFETMYNGHTGRVLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILT
RQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCERCGLIAIANLK
KLSFECRGCKNKTDIVQINIPYACKLLLQELMSMAISPRLLTKDVQTAKEQKRRGG
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atgtacggcggcggcggaggcggcgaggaggaggcgtacgcggcggcggaggtggacgac
ggagcggacgagatatcgcaggaggacacgtggacggtgatcagctcgtattttgaggag
aagggtttggtgaggcagcaattggactcgttcgacgagttcatacagaacaccatgcag
gagattgtcgacgagtccgcacacatcgagatccgacccgaatcgcagcacaatcccggt
cggagctctgaattcgccgagacaatctacaggatcagcttcggccagatatacctgagc
aagccgatgatgacagagtccgatggagagacgaacactctgtatccgaaagcagcaagg
ctgaggaacttgacatattcgtccccattgtacgttgatgtcacaaaacgagtcataagg
aaagggtatgactgtgaggaggtgatagagactcaagagttcaccaaaattttcattggg
aaggtgcctataatgcttcgttcgagctactgcagtttgtacaatctgtccgagaaggac
ttgatggagatgggggagtgcccttatgatcaaggcggttacttcatcatcaatggaagc
gagaaggtcctcattgcgcaggagaagatgagcaccaaccacgtctatgtgttcaagaag
cgccagccgaataagtatgcttacgtggctgaggttaggtccatagccgaggcgcagaac
aaggcgcctagtggcatgtttgtgaggatgctctctagacctggtgcaaaagggggctca
tccgggcagtacatacgtgctacgctcccatacatcaggactgaagtgcctatcataatt
gtttttcgcgctttggggtttattccggataaggaaatcttggaacatatctgctatgac
ttcaatgatgcacagatgatggagctgcttaggccgtcgttggaagaggcatttgtgatt
caaaaccaacaggtagcgcttgattatattggcaagagaggatccactgttggtgttaca
aaagaaaaaagaattaagtatgctagagaaatactccaaagggaaatgcttccacatgtt
ggcatcggagaggggcatgaacacaagaaagcttactatttcggatatgttgttcacagg
cttttgatttgtgcacttggacgaagggcagaagatgatcgcgatcattatgcaaacaag
aggctcgaccttgctggctccttactgggcggtctgtttcggatgctattcagaaagcta
acgagggacgttagatcctacgttcaaaagagtgttgataatgggaaggatgtaaatttg
caatttgcaatcaaagcaaaaactgtcacaagtgggcttaaatactctcttgctactggg
aattgggggcaagcaaatgcagctggaactagagcaggagtgtctcaggtgctcaatcgt
ttaacatttgcttcaacactttcccatctgagaagactgaactcgcctattggccgtgag
ggcaaactggctaagccgcgtcagctgcataactcgcattggggtatgatgtgccctgca
gaaacacctgaaggccaagcatgtgggctggtgaagaaccttgcacttatggtctatata
acagttggatcagcagcaaatccgattctggagtttttggatgagtggggtacagagaat
tttgaggaaatatcaccagcagtgattcctcaagccacaaaaacatttgtgaatggttgc
tgggttggtattcaccgtcagcccgagctgctggtgaggactctccggcagctaaggaga
caggttgatgtgaacacggaagttggaattgtccgtgacatacgcctcaaggagcttcgt
ctgtacacagactatggccggtgcagtcgccccttgttcatcgtcgagcagcagaggttg
cacataaagaagagtgacattcttgccctgcagcaaagagaaacccccgaagagtacggt
tggaacgaccttgttaggaaaggattcatcgagtatgttgacacagaagaggaggagacg
acgatgatatcaatgacagtaaatgatcttgtacgctcgaggcgtaatccagatgatgca
tattcggagacgtacacgcactgtgagatccacccttcgttgatattaggcgtctgtgct
tcaatcataccgtttcctgatcacaaccagtcgcctcgtaacacttatcagtctgcaatg
gggaaacaagcaatgggaatctatgtcaccaattaccaactaagaatggatactctggca
tatgtgctttactatccgcagaagcctcttgtcacaacgcgtgctatggagcatctgcat
ttcaggcagctcccagcaggcattaacgccattgtcgccattgcctgctactctggttat
aaccaggaagattctgtgatcatgaaccagtcttctatagatcgagggttctttcgttct
ttgttcttccgttcgtatagagacgaagagaagaagatgggaacactagtgaaggaggat
ttcgggcgtccgaatagggacagcaccatgggaatgcggcatggatcttatgacaaatta
gatgatgatggctttgcacctcctggaactagagtctccggcgatgatgtgattattggc
aagacaacaccagttacacaagaagaagctcagggaaaatcagcaagattcactagcaag
gatcacagcactagtttacgccatagtgaaactggcattgttgatcaggttctgctgacg
acgaatgccgatggactgaggtttgtgaagattcggatgcgatcagttcgaatcccacaa
atcggagacaagttcagcagcagacatgggcagaagggaacaattggaatgacctacaca
caagaagacatgccatggacaattgaaggcatcactcctgacataattgtgaaccctcac
gccattccttctcggatgacgatcgggcagcttatcgaatgcatcatgggcaaggtcgcg
gctcacatgggcaaggaaggcgacgccacccccttcaccgatgtcactgtggacaacata
agccaagccctacacaagtgtggctaccagatgcgcggtttcgagacgatgtacaacggg
cacacggggcgcgtgctgacggcgatgatattcctcgggccgacctactaccagcggctc
aagcacatggtggacgacaagatccactcgagggggaggggccccgtgcagatcctcacg
aggcagccggccgaggggaggtcgagggacggtggcttgaggttcggggagatggagcgc
gactgcatgatagcccacggggcctcgcacttcctcaaggagcggctgtttgatcagagc
gacgcgtatagggtccacgtgtgcgagaggtgcgggctcatcgccattgctaatttgaag
aagcttagcttcgagtgcagaggatgcaagaacaaaacagatattgttcagataaatata
ccttatgcctgcaagcttctgctccaagaactcatgtccatggcgatttctccgcggcta
ctgacgaaggatgttcaaactgccaaggaacagaagaggagaggcggatag
DBGET
integrated database retrieval system
