Salvia miltiorrhiza (redroot sage): 131009503
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Entry
131009503 CDS
T09291
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131009503
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smil03019
]
131009503
03012 Translation factors [BR:
smil03012
]
131009503
Enzymes [BR:
smil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131009503
Messenger RNA biogenesis [BR:
smil03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
131009503
Translation factors [BR:
smil03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
131009503
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
OB_NTP_bind
R3H
HA2_C
AAA_22
Ank_5
AAA_19
Ank_2
ATPase
HA2_N
nSTAND3
ABC_tran
AAA_7
Ank_3
Ank_4
AAA_16
Rad17
PhoH
FtsK_SpoIIIE
CM_2
Sigma54_activat
SRP54
Motif
Other DBs
NCBI-GeneID:
131009503
NCBI-ProteinID:
XP_057792859
LinkDB
All DBs
Position
2:75429185..75435963
Genome browser
AA seq
1203 aa
AA seq
DB search
MGPPGSSGKEAGQKRHKKEKVVVSEATRIRVAEILEKFRSSDDEVYKFEDNLNNQERAAV
HVMSRKMGFKSKSNGKGQDRRICIYKLKKELGIMKGRENIASFRFSGDSQAALQDLFSRY
PPNDVDMTGNKVEVSSGHNDGGGVKRDDFFLKPVMNPSEIANKVESLASRIEKETSLKQL
AENRSKLPIASFKDDITSTVKSNQVVLVCGETGCGKTTQVPQFLLDHAWSKGQTCKIVCT
QPRRISATSVAERIASERGESIGDSIGYKIRMETKGGRNSSLVFCTNGVLLRVLVSKGKS
RSKKTKSALANLTHIIVDEIHERDRFSDFMLAILRDMLPLHPHLRLVLMSATIDADRFSK
YFGGCPVVRVPGFTYPVKTFYLEDVLALVRSTENNHVTCTNESKAVKDSPLTEECRIALD
EAIDSALSNDEFDLESLSSQVDSRIFNYQHSKTGVTPLMVLAGQGRVSYVCTLLSFGVDC
HLRCNAGKTAFDYAEQGNQVEAAEIIKKHMGKAFTHSEQEQKLLDKYLSNADPELIDCLL
IEQLLRRICSDSTDGAVLVFLPGWDDINRTRDKLLSSPYFKDPSKFLVIALHSMVPLVEQ
KKVFKRPPPGCRKIVLSTNIAETSVTIDDVVYVIDSGRMKEKSYDPYNNVSTLHSSWVSK
ASAKQREGRAGRCQAGICYHLYSKFRAASLPDFQVPEIKRMPIEELCLQVKLMDPSCKIE
EFLQKTLDPPVYETIRNAIMVLQDVGALTLEEQLTELGEKLGALPVHPLTSKMLFFAILL
NCLDPALTLACASDYKDPFILPMLPTEKKKAQAARLELASLYGGNGDQLAIIAAFDCWKM
AKEKGDQARFCAQYFVSAPTMRMISSMRKQLEGELLRHGFIPEDASRCSLNARDPGILHA
VVFSGLYPMVGRVIPQGNRSLVETAGGNKVRLHQFSTNAKLSSKKSSIPPLIMFDEITRG
DGGMHIRNCSVVGSLPLLLLATEIVVAPTDEDDEEDEESDAEEPDADNDSDEEDKVEPQR
SSKSNGEKILSSPENAVKVFVDRWLPFQSTALDVAQVYCLRERLSSAILFKVTHPRRNLP
EHLGASLYAIACILSYDGMSGISLPPEPVDALATMVGAADIGHANRGKKTAINRPSTTYL
RSLLYHDSNRNHQHSSHNQSHTSHHHAVGPQKHVPEARPPQVMTNVAKGNFSKRQRGNVM
NLR
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgggcccaccaggttcatccgggaaggaggcggggcagaagcggcacaagaaagagaag
gtggttgtgtcggaggccacccgcattcgcgtcgcggagattctggagaagtttcggagt
tcagatgatgaggtatacaaatttgaagataacctcaacaatcaggagcgggcggcagtg
cacgttatgagcaggaaaatggggttcaagtcaaagagcaacgggaaaggccaggatcgt
cgcatttgtatctataagttaaagaaggaactaggcattatgaaagggagagagaacatt
gcttctttcagattttcaggggattcgcaggctgctttacaggacttgttttctcggtat
ccccctaatgatgtggatatgactgggaataaggtcgaagtaagtagtggacacaacgat
ggtgggggagtaaagagagatgactttttcttgaaacctgtgatgaatccatctgaaatt
gcaaacaaggtggaatcacttgcttcccgaattgagaaggagacgagcttgaaacagctt
gcagagaacaggtccaagcttccgattgcatctttcaaggatgatatcacatctacagtg
aaatcgaaccaggttgtgctcgtctgtggtgaaactggatgtggcaaaacaacacaggtc
cctcagtttctcctcgaccatgcatggagtaaaggacagacatgtaaaattgtttgtact
cagccaaggcgaatctctgccacgtcagtcgctgaaagaattgcttctgaaagaggtgaa
agtatcggcgattctattggatacaagattcggatggaaaccaaaggtggaaggaattcg
tctcttgtgttctgcaccaatggggttctgctgagggttctagtcagtaaaggaaaaagc
agatcgaaaaaaacaaagagtgctttggctaatttaacccacataattgtggatgaaatt
catgaaagggatcgcttctccgatttcatgcttgcaatactcagagacatgcttccttta
catcctcacctgcgcctggtattgatgagtgccaccattgatgcagaccggttttcaaag
tactttggtggctgcccagttgttcgtgtaccgggttttacgtatcccgtaaaaactttc
tacttggaggacgtactagcactagtgagatcgactgaaaacaatcacgttacatgcacg
aatgagagcaaggcagtcaaggactctccattaactgaggaatgccggatcgctctcgac
gaggctattgactcagctttatcgaatgatgagtttgatctcgagtcgctatcttctcaa
gtagattcaaggattttcaattaccagcactcgaaaactggagtaacccccttgatggtg
ttagccggacaaggaagagttagctatgtttgcacgcttctctcgtttggtgtggactgc
catttgcggtgtaatgcagggaagactgctttcgactacgctgaacaaggtaatcaggtg
gaagctgctgaaattatcaaaaaacatatggggaaagcatttacgcactcggagcaggag
cagaagttacttgataaatacttatcaaacgctgaccctgagcttatcgattgtctgctt
atcgaacaacttctgaggagaatctgtagtgactcgacggatggagctgttctcgtcttt
cttccgggttgggatgatataaacagaacgagagacaagttgctatcgagcccttatttt
aaagatccatcgaaatttctcgttattgctcttcattctatggttccattggtcgagcaa
aagaaagtcttcaaacgtccgcctcctggatgccgcaagatcgttctttctactaatatc
gccgagacttctgtcaccatcgatgatgttgtttatgtcatagacagcgggcggatgaaa
gagaaaagttacgacccttataacaatgtgtcaactcttcattcttcttgggtgtcgaag
gcgagcgctaagcagagagagggccgcgcggggcgttgtcaagctggtatttgttatcat
ctttattcgaaatttcgggctgcttctctgccggatttccaagttcccgagataaagagg
atgccgatagaagagctgtgcctgcaggtgaagcttatggacccatcttgcaaaatcgaa
gaatttttgcagaagacgttggatccgcccgtttatgagacgatacggaatgcaataatg
gttcttcaggatgtcggggcgttgactctagaagagcaactcacggaactcggggagaaa
ctcggagctctacccgtccaccctctgaccagcaaaatgttatttttcgcgatactgttg
aattgcctcgacccagcattgactttagcttgcgcttcggactacaaagaccccttcatt
ttgccgatgcttcctaccgaaaagaagaaagctcaagcggctagattagagctggcctcg
ctctatggtggcaatggcgatcagttagctataatcgccgctttcgactgctggaaaatg
gcgaaggaaaagggtgaccaagcgaggttttgtgctcagtacttcgtatccgcaccgact
atgaggatgatttcgagcatgcggaagcaactcgaaggcgaactacttcggcacggtttt
attccggaagatgcctctcgttgtagcctcaacgcacgtgaccccggtatactccatgct
gtagttttctccggtctatatccgatggtcgggagagtcattccgcaaggtaataggtct
cttgtcgaaactgccggtggaaataaggtaaggttgcaccagttttcgaccaacgctaag
ctctcttcgaagaaatcgagtattcctcctttgatcatgtttgacgagataacccgtgga
gacggcggaatgcatatcaggaactgtagcgttgtaggttcgctccccttgctgttgtta
gccacggagatcgtcgtggccccgaccgatgaagatgacgaggaggatgaagagagtgat
gccgaggaacctgatgccgataatgatagcgacgaggaggataaagtagagcctcaaagg
tcgtcgaaatccaacggcgagaagatcttgtcatcgccggagaatgccgttaaagttttc
gtcgatcgatggctaccgtttcagtccacagctcttgatgttgctcaggtatactgcttg
agggagagactgtcttcagcaatcttgttcaaggtaacgcatccgaggagaaatctaccg
gaacatctcggagcctcgctgtatgcaatcgcctgtatcctctcctacgacgggatgtcc
gggatctcgttgccaccggaacctgtcgatgctctcgccacgatggtcggtgccgccgac
atcggccatgctaatcgcggtaagaagacggcgatcaaccggccctccacgacctatctg
aggtcgcttctgtaccacgacagcaatcggaaccaccagcattcgtctcataaccagagc
cacacgtcgcaccatcacgcagttggccctcagaagcatgtgccggaggcgcggccccca
caagtgatgacgaacgttgcgaaggggaacttctccaagcggcagcgtggcaacgtaatg
aaccttaggtga
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integrated database retrieval system
