Salvia miltiorrhiza (redroot sage): 131011102
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Entry
131011102 CDS
T09291
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 28
KO
K13181
ATP-dependent RNA helicase DDX27 [EC:
5.6.2.7
]
Organism
smil
Salvia miltiorrhiza (redroot sage)
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smil03041
]
131011102
03009 Ribosome biogenesis [BR:
smil03009
]
131011102
Enzymes [BR:
smil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131011102
Spliceosome [BR:
smil03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
131011102
Ribosome biogenesis [BR:
smil03009
]
Eukaryotic type
Pre-60S particles
Helicases
131011102
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
DRTGG
Motif
Other DBs
NCBI-GeneID:
131011102
NCBI-ProteinID:
XP_057794855
LinkDB
All DBs
Position
2:64078338..64090839
Genome browser
AA seq
732 aa
AA seq
DB search
MEKFVFEPPSDEEIDHNIETESEEEAEDSDNEEIVRKNKKTLPWDFSSYTESIADEHARR
RTTSVDYKISKALERRPIAAGYDDSEERSDSEIEIQEGYRSEEEDAVPTTSGNDAKAFFS
NLDGVLFKANSFLDLHLSRPLLRACEALEYSKPTPIQAACIPLALNGRDICASAITGSGK
TAAFALPTLERLLYRPKNRPAVRVLILSPTRELAAQIGSMIKQLAQFTPNIRCCVIVGGD
STKAQEAALRTLPDIVVATPGRMIDHLRNSMSVHLDELAVLILDEADRLLEEGFSPEINE
LVKLCPKRRQTMLFSATMTEKVDELIKLSLNNPIRLAADPTAKRPPGLTEEVVRIRRMLE
GNPEAVLLYLCSQTFTSRVIIFSGTKKAAHRLKILFGLAGLKAAELHGDLTQAQRLNALD
VFGKQQVDFLIATDVAARGLDITGVRTVINFACPRDITSYVHRVGRTARGGKVGYAVTFV
TDEDRSLLRTILKQVGSRMRNRIVSEQSIRKWSEIIEQMEDQVSSIIQEEKEEMALRKAE
MEATKAENMIAHRDEIYSRPKRTWFATEKEKKLVAKASKEALDKGKGSGRNTISAEEAEE
LKMKEKRKREHEKNLPRKKRRKLEAAREMLEDEDDVKGGEKKDKGKNGISLVDVAYRRAK
AVKAATKAVDAGKIVKKHIKNPKHPSQTTKSRTDEMQELFQDDMSEKRQKRTLKGGAKKK
SSFKSKSRYKRR
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggagaaattcgtcttcgaaccgcccagcgatgaggaaatcgaccataacattgagacc
gagtccgaagaagaagctgaagattccgacaacgaagaaatagtacggaaaaacaagaaa
accttgccttgggacttctcctcctacactgaatcgatcgccgacgagcacgcgaggcgg
agaaccacttcggtggactacaaaattagtaaagctctcgagcgccgcccgatcgccgca
ggatatgatgattccgaggagcgttcggattccgaaatcgagatccaagagggttatagg
tctgaggaggaggacgccgtgccaacgacaagtggaaatgatgcaaaggcgttcttttcg
aacctggatggtgtgttgttcaaggctaactcgtttctggaccttcatctctcgaggcca
ttgcttcgggcgtgtgaagctttggaatatagtaagcccactcccattcaggctgcgtgt
atacctttggccttaaatggacgtgatatatgcgcgagtgctattactggatccgggaag
acagctgcttttgctttaccaaccttggagaggcttttgtaccggccaaaaaataggcca
gctgttagagttctaattctttcacctacaagggagttggctgctcagattggtagtatg
atcaagcaacttgctcagtttacaccgaacatcagatgttgtgtgattgttggtggtgat
tcaacaaaggcgcaagaagcagctttaagaacattgccggatatagttgttgctactcca
ggacgtatgatagatcacctgcgtaactctatgtcggtacatctggatgagcttgcagtt
ttgattcttgatgaagctgatcggcttcttgaggaaggatttagccctgaaattaatgaa
ctggtaaaattatgtcctaaaaggagacagaccatgttattttcagcaactatgactgag
aaagttgatgagcttatcaagctttccttgaataatcctatacgcctggcagctgatcca
acagcaaagcggccacctgggctaactgaagaggtggttcgcatacgccgaatgcttgaa
ggaaatccagaagcagttcttctttacttatgctcccagacctttacttctagagtgatt
attttcagtggtaccaagaaggcagctcatagattaaaaattctatttgggttagctggc
ttgaaagcagctgagcttcatggagacctcacccaagcccagcgtttgaatgccttggat
gttttcgggaagcagcaagtggactttctaattgcaacagatgttgctgctcgtggtctt
gatattactggtgttcgtacagtcattaattttgcatgtccacgtgatattacaagttac
gtccatcgagtgggtcgcactgccagaggtggtaaagtaggatatgctgttacctttgtt
actgatgaagatcggtctctcctacgcactatccttaaacaagttggttcgaggatgagg
aaccgaattgtatctgaacaatcaatacggaagtggtctgaaataattgagcaaatggaa
gatcaagtatcatcaattattcaagaagagaaggaagagatggcactaagaaaagctgaa
atggaggctacaaaggcagaaaatatgatcgcacacagagatgaaatttattcacgccct
aaaagaacgtggtttgctactgaaaaggaaaagaaacttgttgctaaggcatcgaaggaa
gctttggataagggaaaaggttctggacgtaacacaattagtgcagaagaagcagaggag
ttgaagatgaaggaaaagagaaagcgagagcacgagaaaaacttgccaaggaaaaagcga
aggaaattggaagcggctagagagatgttagaagatgaggatgatgtcaagggtggagag
aaaaaagataaagggaaaaatggtatttctcttgttgatgtggcatatcgaagagcaaaa
gcagtcaaggctgcaacaaaggctgttgatgctggcaagattgtgaaaaaacacattaaa
aatcccaagcatccttcacaaacaactaaatcgagaacagatgaaatgcaagaacttttc
caggatgacatgagtgagaaaaggcagaaaagaaccctaaaaggtggtgcgaagaagaag
tcctcattcaagagcaagtcacggtacaagcgccggtag
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