KEGG   Salvia miltiorrhiza (redroot sage): 131011847
Entry
131011847         CDS       T09291                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
smil  Salvia miltiorrhiza (redroot sage)
Pathway
smil03030  DNA replication
smil03410  Base excision repair
smil03420  Nucleotide excision repair
smil03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:smil00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    131011847
   03410 Base excision repair
    131011847
   03420 Nucleotide excision repair
    131011847
   03430 Mismatch repair
    131011847
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:smil03032]
    131011847
   03036 Chromosome and associated proteins [BR:smil03036]
    131011847
   03400 DNA repair and recombination proteins [BR:smil03400]
    131011847
DNA replication proteins [BR:smil03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    131011847
  DNA Replication Termination Factors
   ELG1-RFC complex
    131011847
Chromosome and associated proteins [BR:smil03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    131011847
DNA repair and recombination proteins [BR:smil03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     131011847
  Check point factors
   HRAD17(Rad24)-RFC complex
    131011847
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_22 RCF1-5-like_lid Rad17 RuvB_N AAA_16 AAA_5 AAA_11 Mg_chelatase AAA_14 AAA_24 ResIII AAA_assoc_2 AAA_2 SLFN-g3_helicase nSTAND3 PhoH AAA_19 AAA_28 AAA_30 DUF3853 AAA_7 DNAX_ATPase_lid DUF815 RNA_helicase NPHP3_N IstB_IS21 AAA_25 Parvo_NS1 ATPase_2 AAA_18 TIP49 bpMoxR NB-ARC
Other DBs
NCBI-GeneID: 131011847
NCBI-ProteinID: XP_057795704
LinkDB
Position
2:48282238..48285778
AA seq 341 aa
MAPVLPSSQQWVEKYRPKQVKDVAHQEEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL
AIAHQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSARQGGYPCPPYKIIIL
DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEEIMTS
RILYICDEEGLNLDPEALTTLSSISQGDLRRAITYLQGAARLFGSSISSKDLISVSGVIP
DDVVQALFAACRSGDFDMADKEVKNVIAEGYPASQMLNHLYDVVVGSDDIPDDQKARICK
KFGEADKCLVDGADEYLQLLDVASSIMRALNNMPQEFPFGS
NT seq 1026 nt   +upstreamnt  +downstreamnt
atggcgccagttttgccgagctctcagcaatgggtcgagaaatatcgaccgaaacaagtg
aaggatgttgcgcaccaagaagaggttgttcgagttcttaccaacactttggagacaacc
aattgtccgcacatgctattttatgggcctcccggtactgggaaaaccactacagctctt
gccattgctcatcagctttacggccctgagttatacaagtctagagtactggagctgaat
gctagtgatgatcgtgggataaatgttgttcgtacgaaaataaaagattttgctgctgtt
gctgttggctctgcacgtcaaggtggttatccttgcccaccttataagattataattctt
gatgaggcagattcgatgactgaagatgctcagaatgccttgagacgcaccatggagaca
tactcaaaggttacaagattcttcttcatctgtaactacatcagcagaattatagaaccc
cttgcatctaggtgtgcgaaattcagattcaaaccacttacagaagaaattatgacatct
cgcattctatacatctgcgacgaggaaggtcttaacttggatccagaggctcttacaacc
ttaagttctatctctcaaggtgatctgcgacgtgctataacgtatctacaaggtgctgct
cgcttattcggatcctcaatttcatctaaggacttaatcagtgtgtccggtgtcatccct
gatgatgtcgtgcaggctctctttgcagcttgcagaagtggtgatttcgacatggctgac
aaggaagtaaaaaacgtgattgctgaaggttatccagcttctcagatgctcaatcatttg
tacgatgtagttgtcggatcagatgacataccagatgaccagaaagcaagaatatgcaag
aaatttggagaggcagataagtgtcttgtagatggagctgacgagtatttgcaactgttg
gatgtggctagcagtataatgcgcgcactcaacaacatgccacaagaattccctttcggg
agctag

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