KEGG   Salvia miltiorrhiza (redroot sage): 131011861
Entry
131011861         CDS       T09291                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
smil  Salvia miltiorrhiza (redroot sage)
Pathway
smil03030  DNA replication
smil03410  Base excision repair
smil03420  Nucleotide excision repair
smil03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:smil00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    131011861
   03410 Base excision repair
    131011861
   03420 Nucleotide excision repair
    131011861
   03430 Mismatch repair
    131011861
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:smil03032]
    131011861
   03036 Chromosome and associated proteins [BR:smil03036]
    131011861
   03400 DNA repair and recombination proteins [BR:smil03400]
    131011861
DNA replication proteins [BR:smil03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    131011861
  DNA Replication Termination Factors
   ELG1-RFC complex
    131011861
Chromosome and associated proteins [BR:smil03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    131011861
DNA repair and recombination proteins [BR:smil03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     131011861
  Check point factors
   HRAD17(Rad24)-RFC complex
    131011861
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 RCF1-5-like_lid AAA_16 AAA_11 AAA_5 AAA_assoc_2 AAA_22 DUF815 AAA_14 AAA_24 ATPase_2 RuvB_N AAA_7 AAA_30 DNAX_ATPase_lid bpMoxR AAA_3 AAA_25 AAA_19 ResIII nSTAND3 AAA_18 SLFN-g3_helicase AAA_2 DUF3086 RNA_helicase Mg_chelatase AAA_28
Other DBs
NCBI-GeneID: 131011861
NCBI-ProteinID: XP_057795727
LinkDB
Position
2:complement(48485441..48488603)
AA seq 364 aa
MAEVIDVMDIDDDNGNISSAKPNLKGKNVVVSAAPPDTRATPWVEKYRPHSLDDVAAHRD
IVDTIGRLATGNRLPHLLLYGPPGTGKTSTVLAMARKLYGNKLQNMVLELNASDDRGIDV
VRQQIQDFASTQSISFGAKSAVKLVLLDEADAMTKDAQFALRRVIEKYTKSNRFALICNN
VNKIIPALQSRCTRFRFAPLDAVHVRERLKHVIESEGLDVPESGMKALVQLSNGDMRKAL
NILQSTHMACQQITEEAVYLCTGNPLPKDIEQISHWLLNEPFTTSSKRISDMKTRKGLAL
VDIVREVTMFVFKIKMPPAVRIQLINDMADIEYRLSMACNDKLQLGSLIAAFTRARGSIV
AATK
NT seq 1095 nt   +upstreamnt  +downstreamnt
atggcggaggtaatagatgtgatggacatcgatgacgacaacggcaacatcagttctgcc
aagcccaacctcaagggcaagaacgtcgtcgtttcagctgctccaccggacaccagagcc
accccctgggtcgagaaataccgcccccactctctcgacgacgtcgccgcccaccgtgac
attgttgacaccattggtagattagcaactgggaacagattgccccacctgctgctttat
ggaccgccgggaacagggaagacatctaccgttttggcaatggctcggaaactttatggg
aacaagttgcaaaacatggttctggagctgaatgcgtccgatgatcgtggtattgatgtt
gttaggcagcagattcaggactttgcaagcacccagagcatctcgtttggggcaaagtct
gccgtaaaattggttctactggatgaggcggatgccatgactaaggatgcacaatttgct
cttcgaagagtgattgagaaatacaccaagagcaatagatttgctttgatttgcaacaat
gtcaataaaattattccagcactgcaatcgagatgtacacggttccgctttgcccccctt
gatgctgttcatgtcagggagaggctcaaacatgtaattgaatctgagggacttgatgtt
ccagaaagtggtatgaaagctcttgtacagcttagcaatggtgatatgagaaaagccttg
aatattttacagtcaacacatatggcctgtcagcagatcacagaagaagctgtgtacttg
tgtactgggaaccctttgcctaaagacattgagcagatttcccattggctcttgaatgaa
cccttcacaactagcagcaaaagaatctctgatatgaagaccagaaaagggttggctctg
gttgatattgtgagagaagttaccatgtttgtctttaagatcaagatgccaccagctgtc
cgcattcaacttattaatgatatggctgatatagaatataggttgagcatggcatgcaat
gacaagctgcagctggggtcattaattgctgcttttacacgagccagaggttcaatagtt
gctgctacaaaatga

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