Salvia miltiorrhiza (redroot sage): 131013283
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Entry
131013283 CDS
T09291
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB4-like isoform X1
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03022
Basal transcription factors
smil03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
131013283
09124 Replication and repair
03420 Nucleotide excision repair
131013283
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smil03021
]
131013283
03400 DNA repair and recombination proteins [BR:
smil03400
]
131013283
Transcription machinery [BR:
smil03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
131013283
DNA repair and recombination proteins [BR:
smil03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
131013283
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
131013283
NCBI-ProteinID:
XP_057797331
LinkDB
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Position
2:30358252..30362714
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AA seq
298 aa
AA seq
DB search
MTPVSSKLYAGPLFFYDVSLLMVLIDTNPFFWNSAQSTLPFSKFLTHVLAFLNSILLLNQ
MNQVVVIAAGYNSCGYIFDSSDPQSQNQRAEDLLDKLEEFVDNDQELCREQSVDGPGFSL
LSGSLSMALCYIQRVFRTVPLHPQPRILCLHGSPDGPGQYVAIMNSIFSAQRSMVPIDAC
VIGAQHSAFLQQASYITGGVYLKPQILDGLFQYLSTVFATDLHSRCFLQLPKPAGVDFRA
SCFCHKNTIDMGYICSVCLSIFCKHQKKCSTCGSVFGQAQTQDSSTTPDRKRKTPVDG
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atgacccctgtctcatccaagctttatgcaggtcctcttttcttctatgatgtgagtctg
ttgatggtactaattgacacgaatccattcttttggaactcggctcaatccacgcttcct
ttctccaagttcttgacccatgtacttgcatttttgaattctatacttttgctgaatcag
atgaaccaagtggttgtcattgcagctggttataattcgtgtggctacatatttgattcc
tcagacccacagagccaaaatcaacgggcagaggatttgctggataaattggaggaattt
gtggacaatgaccaggaactatgtcgtgaacagtctgtggatggccctgggttctcactt
ttatctggttccctctcgatggccctttgctatattcagagggtcttccgtacagtgccg
cttcatccccagcctcggatattatgcttgcatggatctccagatggacctggacaatat
gtagcaatcatgaattcaattttttctgctcagcgatcaatggttcctatagatgcatgc
gtgataggagctcaacactctgctttcctacagcaggcttcttatataactggtggtgta
tatctgaagccgcagatattggacggattgtttcagtatctttcgacagtgtttgctact
gatttgcattctcgttgctttttacaacttcctaagcctgcaggagtagactttcgtgcg
tcgtgtttctgccacaaaaacacaattgatatgggctacatttgctctgtttgtttatct
atattctgcaagcatcagaagaaatgttctacatgtggatcagtgtttggtcaggcccaa
acacaggactcctcgacaacaccggaccggaagaggaagacaccggtggatggttag
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