Salvia miltiorrhiza (redroot sage): 131013392
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Entry
131013392 CDS
T09291
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2 isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03020
RNA polymerase
smil03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
131013392
09124 Replication and repair
03420 Nucleotide excision repair
131013392
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smil03021
]
131013392
03400 DNA repair and recombination proteins [BR:
smil03400
]
131013392
Enzymes [BR:
smil01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
131013392
Transcription machinery [BR:
smil03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
131013392
DNA repair and recombination proteins [BR:
smil03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
131013392
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
131013392
NCBI-ProteinID:
XP_057797441
LinkDB
All DBs
Position
2:40408486..40415281
Genome browser
AA seq
1210 aa
AA seq
DB search
MYMDDEYEQGDNGEEQGYNIGEEYEDGEGDGDGDGEEDITQEDAWAVISAYFEEKGLVRQ
QLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTE
SDGETATLFPKAARLRNLTYSAPLYVDVTKKVIKKGHDGEEVTETQDFTKVFIGKVPIML
RSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKY
AYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALG
FVADKDILEHICYNFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIK
YAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAG
PLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQAN
AAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQ
ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR
NPDMLVSTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKD
ILALQQRESPDDGGWHDLVSKGFIEYIDTEEEETTMISMTIHDLVQARERPQEAYSDTYT
HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP
QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSVDRGFFRSLFFRSY
RDEEKKMGTLVKEDFGRPDRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIA
PDDAQGQAARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS
SRHGQKGTVGMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE
GDATPFTDVTVDNISKALHKCGYQMRGYETMYNGHTGRRLSSMIFLGPTYYQRLKHMVDD
KIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIH
VCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDIK
QNKDLKKKGA
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atgtatatggatgatgagtacgagcagggcgacaacggcgaggagcaagggtacaacatt
ggcgaggagtacgaagacggcgagggcgacggcgacggcgatggtgaggaggatatcacg
caggaggacgcctgggcggtgatcagcgcttactttgaggagaagggtctggtgcggcag
cagctcgactccttcgacgagttcatccagaacacgatgcaggagattgtcgacgagtcg
gccgacatcgagatccgccccgaatcgcagcacaaccccggccatcaaccggacttcgct
gagactatatacaagatcagtttcggtcagatatacctcagtaaaccaatgatgacagaa
tctgatggagaaacagctactttgtttcccaaggctgcaaggctaaggaatttgacatat
tcagctccattgtatgttgatgttaccaagaaagtcataaagaaaggtcatgatggcgag
gaagttaccgagactcaggatttcacaaaagtctttattggaaaggttcctataatgctg
aggtcaagttattgcacactatatcagaattctgagaaagatttgacagagcttggagag
tgcccatatgaccaaggtggttatttcatcatcaacggtagtgaaaaggtgttgattgct
caggagaagatgagcactaatcatgtctatgtatttaaaaagaggcaaccaaacaagtat
gcctatgtggctgaagttaggtccatggcggagacacaaaacaggccacctagtaccatg
ttcgtccggatgctttctcgaactagtgccaaagggggttcatcgggccaatatatacgt
gctaccctcccatacatacgcactgagattcctattattattgtgtttcgagcactagga
tttgttgctgacaaagatatattagaacatatctgctacaattttcaggatactcaaatg
atggaactgcttcggccttccttggaagaagcatttgttatccagaatcaacaggttgct
cttgactacattgggaaaagaggtgccactgttggtgtcaccaaagagaaaagaatcaag
tatgccaaagagattcttcaaaaggaaatgcttcctcatgttggtgttggggagtactgt
gaaacaaaaaaagcttattactttgggtatatcatccatcgacttcttttatgtgcacta
ggccgaagagcagaggatgatagagaccactatggcaataaaagactggatcttgctggt
cctttgttgggtggcctcttccgaatgctattcagaaagttgaccagggatgtgaggtct
tacgttcagaagtgtgtagacaatggcaaggatgtgaatttacaatttgcaataaaagcc
aaaaccattaccagtggtttgaaatactcacttgctactggtaactggggccaagcaaat
gcagctggcacaagagctggagtatctcaggtgttgaatcgcttgacttatgcctctacc
ttgtcacatttgcgaaggctcaactctcctataggccgtgaagggaaactggctaaacca
aggcagttgcataattcacagtggggaatgatgtgtcctgcagaaacacctgaaggacag
gcatgtgggttggtgaagaaccttgctttgatggtgtatattacggttggctcagcagca
tatccaattttagaatttttagaggaatggggaactgagaactttgaggaaatatctcct
gctgtaattccccaagccactaagatctttgtaaatggttgttgggttggtattcatcgc
aaccctgatatgttggtgtctacactaagacgcttgaggagacgtgttgatgtcaataca
gaagttggggtggtccgagatattcgtctgaaagaactcaggatatacactgattatggt
cgctgcagtcgtccattatttattgtggaaaagcaaagacttcttataaaaaagaaggat
atcttggccttgcaacagagagaatctcctgatgatggtggttggcatgacctagtttca
aagggcttcatagaatacatagatacagaagaagaggaaacaactatgatttctatgaca
atacacgatctggttcaagcaagggaaagacctcaggaggcttattcagatacttacacg
cactgtgaaattcatccttccttgatactaggtgtttgtgcttcaattattccattcccg
gatcacaaccagtctccacgtaacacgtatcagtcagctatgggtaaacaagctatgggc
atttatgtcaccaattaccaatttcgaatggacactttggcttatgtgctgtactatcct
caaaaaccacttgttacaactcgggctatggagcacttgcattttaggcagctacctgct
ggcattaatgccatagttgccattgcatgctactccggatacaatcaagaagattcagtt
atcatgaatcagtcatcagttgaccgtggtttcttccggtctttatttttccgttcatac
agagatgaagagaagaaaatggggacattagtcaaagaggattttggacgcccagataga
actaacaccatgggcatgcgccatggctcctatgataagttggatgatgatgggcttgcg
cccccaggaactagagtttcaggcgaggatgtgattattgggaaaacgtctcccatagct
cctgatgatgcccaagggcaagctgctcgttacacaaaacgtgatcatagtacaagctta
cggcacagtgaaactggaatggtggatcaggtcctgctgactacaaatgctgatgggttg
agatttgtcaaagtgagggtgagatcagttagaattcctcaaattggagacaaattcagt
agcagacatgggcagaagggaacagtgggtatgacttatacacaagaagacatgccatgg
acgttggaaggcatcactcccgacatcatcgtcaaccctcatgctattccatctcgtatg
actatcggtcagcttattgagtgtatcatgggcaaagttgctgcacatatggggaaggaa
ggagatgctactcctttcactgatgtaactgtggacaatatcagcaaagcccttcacaaa
tgtggctatcagatgcgtggttatgagaccatgtacaatggccatactggcaggcgtctt
tcgtctatgatattccttggtcccacttactaccagaggctgaagcatatggttgatgac
aagattcactctcgtggtagaggccctgtgcaaattctcacaaggcaacctgctgaggga
cggtcccgcgatggtggtcttcgttttggtgaaatggaacgagactgtatgattgcacat
ggggccgctcattttctcaaggagaggttgtttgatcaaagtgatgcatacaggatacat
gtttgcgagcgatgtggattaatagctattgctaacctcaagaaaaattcatttgagtgc
agagggtgcaaaaacaaaaccgacatcgttcaggttcatattccatatgcttgcaagcta
cttttccaagagctcatggctatggctatagctcctagaatgctaaccaaggacattaaa
caaaacaaagacctaaagaagaaaggagcttaa
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