Salvia miltiorrhiza (redroot sage): 131013622
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Entry
131013622 CDS
T09291
Name
(RefSeq) LOW QUALITY PROTEIN: cullin-4-like
KO
K10609
cullin 4
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03420
Nucleotide excision repair
smil04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
131013622
09124 Replication and repair
03420 Nucleotide excision repair
131013622
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smil04121
]
131013622
03400 DNA repair and recombination proteins [BR:
smil03400
]
131013622
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
smil04147
]
131013622
Ubiquitin system [BR:
smil04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Cullin
131013622
DNA repair and recombination proteins [BR:
smil03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
131013622
TCR (transcription coupled repair) factors
Cul4-CSA complex
131013622
Exosome [BR:
smil04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
131013622
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cullin
Cullin_Nedd8
DUF6933
ORC5_lid
Motif
Other DBs
NCBI-GeneID:
131013622
NCBI-ProteinID:
XP_057797739
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Position
2:43998527..44004981
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AA seq
823 aa
AA seq
DB search
MSHPASSTSTSNPSKRSSSSPHSAAAAAPILPAMKKAKSQSQHNTPHVHFSDAPALSPMI
EDDPNDAVLEASSPSSAFGRTGAASGGGVTANLSRKKATLPQPTKKLVIKLNKAKPMLPV
DFEENTWATLKSAISAIFLKQPNPCDLEKLYQAVNDLCLHKMGGSLYQRIEKECETYISA
ALQSLVGQSEDLVVFLSLVQKRWQDFCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQ
LFHKHLSLASEVERKTVFGLLKMIESERLGEAVDRTLLNHLLKMFTALGIYPESFEKPFL
EGTSEFYAAEGVKYMQQADVPDYLKHVEVRIRKKTERCLIYLDASTRKPLVATAERQLLV
RHVSAILDKGFMTLMDGKRIEDLQRMYMLFSRVDALESLRQSLNQYIRRTGQSIVMDEEK
DREMVSSLLEFKANLDRIWEESFSKNEAFSNTIKDAFEHLINIRQNRPAELIAKFVDEKL
RAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLSKSASIDAEKSMIT
KLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTY
PPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKADFPKGKKELAVSLFQT
VVLMLFNDAQNLCFQDIKESTGIEDKELRRTLQSLACGKVRVLQKIPKGRDVDDDDSFVF
NDQFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLI
TELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaccccgcctcctccacctccacctccaaccccagcaagcgctcctcctcctcc
cctcattccgccgccgcagcagctccaattctccccgcgatgaagaaggccaagtcgcag
tcgcagcacaatactccccacgtccacttctccgacgcacccgccctctcgccgatgatc
gaggacgatcccaacgacgccgtgctcgaggcctcctccccttccagtgccttcggccgc
accggcgctgcctccggcggcggcgtcaccgccaatttgtcgcggaagaaggctaccctc
ccgcagcccacgaagaagctcgtaattaagctcaacaaagccaaaccgatgctgccggtt
gattttgaggaaaatacatgggcaacactcaagtcggctattagcgccatatttttgaag
caacccaatccatgtgacttggagaaactctatcaggcggtgaatgacctttgcctgcac
aaaatggggggaagtctctatcaacggattgaaaaggagtgcgagacctacatatctgct
gcccttcaatctttggtcggccaaagtgaagatctggtggttttcttatcacttgttcag
aagcggtggcaggatttttgtgaccagatgctgatgatccggggtatagcattatatcta
gatagaacatatgtgaagcaaacaccgaacgttcgctcattatgggacatgggcttgcag
cttttccacaaacatctttccctagcttcagaagtggagcgcaaaaccgtatttggtctt
cttaaaatgattgagagtgaaagactaggcgaagcagttgatagaactctccttaatcat
ctattgaagatgttcactgcattgggcatttatccagaaagctttgagaagccattcctt
gaaggtacatctgagttttatgctgccgaaggtgtcaaatacatgcagcaggcagatgtt
ccagattatttaaagcatgttgaggtgcggattcgtaagaaaactgaaagatgtctaatc
taccttgacgcaagtacaagaaagccactagtagccactgcagaaaggcagctgctcgtg
cgtcatgtatctgcgattctcgataagggtttcatgacacttatggatgggaagcgtatt
gaagaccttcagaggatgtatatgctcttctccagagttgatgcccttgaatctttgagg
caatccctgaatcagtacatccgaaggactggccagagtattgtcatggatgaagagaag
gacagagagatggtgtcgagcttattggaatttaaggctaatcttgatagaatatgggaa
gaaagcttttccaaaaatgaagcatttagtaacaccatcaaggatgcatttgagcatctc
attaatatccggcagaatcggcctgctgagctaatcgccaagtttgttgacgagaagctt
cgtgctggaaacaagggtacctcagaagaggaattggagggtacacttgataaagtgtta
gtcttgttcagatttatacagggcaaggatgtattcgaagctttctacaagaaagatctt
gctaaaaggctcttgttgagtaaaagtgcttctattgatgcagagaagtctatgattact
aagttgaaaactgagtgcggtagtcaatttactaacaaactcgaagggatgttcaaggac
atcgaattgtctaaagagattaatgaatcattcaagcaatcatctcaagctcggacaaaa
ctcccatctggtattgagatgagcgttcatgtcttaaccactgggtactggccgacctat
cctcccatggatgtccggctcccgcacgagctaaatgtttatcaggacatttttaaggag
ttttacttgagcaagtatagtgggaggcgattgatgtggcagaactcgttaggtcattgt
gttcttaaagcagatttcccgaagggtaaaaaggagctcgcagtttctttgtttcagact
gttgtattgatgctgttcaatgatgcacaaaatctttgctttcaagatataaaagaatct
acaggtatcgaggataaagagctgagaaggactctgcagtcccttgcatgtgggaaagtt
cgcgttctccaaaaaattcctaaaggcagagatgtggatgatgacgactcctttgtcttt
aatgatcaatttactgctccgctgtatcgtataaaggtaaatgcaattcagatgaaggaa
acagtcgaggagaatacaagcaccacggaaagggttttccaagatcgtcaatatcaggtg
gatgctgctattgttcgtataatgaagacgagaaaagtgctgagtcacactctactgatc
actgaactctttcagcagctgaagtttccaataaaaccggcggacttgaagaagaggatc
gaaagcctgatcgaccgagagtacctggagcgcgacaagaacaacccacaaatatacaac
taccttgcgtga
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