Salvia miltiorrhiza (redroot sage): 131013935
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Entry
131013935 CDS
T09291
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9-like isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131013935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smil03019
]
131013935
03041 Spliceosome [BR:
smil03041
]
131013935
03009 Ribosome biogenesis [BR:
smil03009
]
131013935
03016 Transfer RNA biogenesis [BR:
smil03016
]
131013935
Enzymes [BR:
smil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131013935
Messenger RNA biogenesis [BR:
smil03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
131013935
Spliceosome [BR:
smil03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
131013935
Complex C
U4/U6.U5 tri-SnRNP related factors
131013935
Ribosome biogenesis [BR:
smil03009
]
Eukaryotic type
Pre-60S particles
Helicases
131013935
Transfer RNA biogenesis [BR:
smil03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
131013935
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
131013935
NCBI-ProteinID:
XP_057797847
LinkDB
All DBs
Position
3:25807849..25821464
Genome browser
AA seq
996 aa
AA seq
DB search
MGSVKRRPLEEATEGCETPPLKQRRENGNGDENGLTDEAVTCLHEVSYPEGYAPSTSSNQ
QYEAKPAKEFPFSLDPFQLEAIKCLDNGESVMVSAHTSAGKTVVALYAIAMSLRNKQRVI
YTSPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEITREV
AWIIFDEVHYMRDRERGVVWEESIVMAPRNSRFVFLSATVPNAKEFADWVAKVHQQPCHI
VYTDYRPTPLQHYVFPCGGDGLYLVVDEKGKFREDSFQKALNALIPTSEDRKKENGKGSK
GLVAGKAGEDSDIFKMVKMIILRQYDPVICFSFSKRECEFLAMQMAKMDLSDEDEKVNIE
TIFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGFIKCLFA
TETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDDRGICILMVDE
KLEPSTVKFMLKGSADSLNSAFHLSYNMLLNQIRAADGDPENLLRNSFYQFQADRAIPDL
EKQAKILEAERDSIIIEEEDSLENYYSLLKQYKTLKKEIRDIVFSPKNCLPFLQPGRLVS
IQCTKIDEDSPSFSTQDEVTWGVIINFERVKVASEDDSNKKPEDVSYTVDILTRCRVHKD
EISKKTIRVVPLKESGEPAVVSIPISQQIDSLSSVRLIIPKDLLPLEARENTLKKVSEVL
VRFAKEGVPILDPEDDMKVQSSSYRKATRRIEALENLFEKHEVAKSPLIEQKLKVLHMKK
ELTAKIRSLKKAMKSSSVLAFKDELKARKRTLRRLAYITSDDVVELKGKVACEISSAEEL
TLTELMFNGVLKDVRVEEMVSLLSCFVWQEKLKEAQKPRDELELLFTQLQETARKVAKVQ
LECKVQIDIENFVSSFRPDIMEAVYAWARGSKFYEIMEMTPVFEGSLIRAIRRLEELLQQ
LIQAAKSIGETDLEMKFEDAVTKIKRDIVFAASLYL
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atgggttcagtgaagagaaggcctttggaggaggcgacggagggctgcgagactccgccg
ctgaagcagcggagagaaaatgggaacggtgatgagaatgggttgacagatgaagcggta
acttgccttcacgaagtatcgtatccggaaggctacgcgccgtccacttcgagtaatcag
caatatgaagcaaagccagccaaggaattccccttttctctcgatcccttccagctggaa
gctattaagtgcctcgacaatggcgaatctgtcatggtctctgcgcatacatctgctggt
aagacagttgtggccttgtatgccatcgcgatgtcgctgcgcaacaagcaacgcgtgata
tatacatctccaatcaaagctcttagcaaccagaaatatagagagttcaaagaagagttt
tcggacgttgggttgatgacaggtgatgtcactattgatcccaatgcgtcttgcttggtt
atgaccactgagatctggcgaagcatgcaatacaaaggatcagaaattactagggaagtg
gcgtggattatttttgatgaagtgcattacatgagagacagagagagaggtgttgtatgg
gaagagagtattgttatggccccaaggaactcccgatttgtgtttctctcagctacagtg
cctaatgcaaaggagtttgctgattgggttgcaaaggtgcatcagcaaccatgtcatatt
gtttatacagattatcggccaactccccttcagcattacgtcttcccttgtggaggtgat
ggtctttatttagtggttgatgaaaaaggtaagtttcgtgaggacagctttcagaaggct
ctaaatgctctgattccgaccagtgaagacagaaagaaagagaatggaaaagggtcgaaa
ggtttagttgcaggtaaagctggtgaagatagtgatatatttaagatggtgaaaatgatc
attttgcgccagtatgatcctgtcatatgtttcagttttagcaaaagagaatgtgaattt
cttgctatgcagatggcaaaaatggatctaagtgatgaggatgagaaagtaaacattgaa
actattttctggagtgctatggatatgctgtctgatgatgataagaagctgccacaggtt
tcaaatatgctgcccttgttgaaacgagggataggtgtacatcactctggtttacttccc
atactaaaggaagtcattgaaatcttgttccaggaaggatttatcaagtgcttgtttgcc
acagagaccttcagcattgggctaaacatgcctgcaaaaactgttgtcttcactaatgtt
cggaaatttgatggggataagtttagatggatatctagtggggagtacatacaaatgagt
gggcgagctggtcgccgaggaattgatgatcgggggatttgcatccttatggttgatgag
aagctagagccttcaacagtgaaatttatgttgaaaggaagtgcagattctttgaacagt
gcgtttcacttgagctacaatatgcttttaaaccaaatacgagctgcagatggggatcct
gagaatttgcttcgtaattcattctatcagtttcaggcagatcgtgccattcctgatctt
gagaaacaagcaaaaatccttgaagcagagagggattctattataattgaagaagaagat
agcttggaaaattactactctcttctaaaacaatacaaaactctgaaaaaggaaatacgt
gatatagttttttctccaaaaaattgtttgccttttctgcagcctggaagacttgtttct
atacaatgcacaaagattgatgaggactccccgtcattctctacacaggatgaggtcaca
tggggagtcataataaattttgagagggtaaaagtagcctctgaagatgattcaaacaag
aagcctgaagatgtaagctatacagtggatattctcacgaggtgcagagtgcataaggat
gaaatttctaaaaaaacaattagagtcgttcccttaaaggagtctggagagccggctgtc
gtttcaatccctatttcacagcagattgatagcttaagtagtgtccggctaataatacca
aaagatcttcttccactagaagctcgagaaaatactttgaagaaagtgtccgaagttctg
gttagatttgcaaaagaaggtgtacctattctagatcctgaggatgacatgaaggttcaa
agcagctcttacaggaaggcgacacgaaggatagaagcacttgagaatctttttgagaag
catgaagttgctaaatctcctctgattgagcagaagctcaaagtcctgcacatgaagaag
gaacttacagcaaaaattagatctcttaagaaagcaatgaagtcttcgtcagtgttggca
ttcaaagatgaattaaaagcaaggaaaagaactcttaggagactggcatatattacaagc
gatgatgttgttgagctaaaggggaaagttgcttgcgaaatcagcagtgcggaagagtta
acattgacagaactcatgttcaatggggttctaaaggatgtaagggtggaggagatggta
tctcttttgtcatgttttgtttggcaagaaaaactgaaggaagctcaaaagccgcgggat
gagcttgagttgctttttacacaattacaggagacagcacgtaaggtggctaaggttcag
cttgagtgcaaggtacagatagatatagagaatttcgtgagttctttcagaccagatatc
atggaggctgtctatgcttgggctagaggatctaaattctacgaaattatggagatgaca
cctgttttcgagggcagcttgatccgagcaatcaggagactggaagaactccttcagcag
ctcatacaagctgcaaaatctattggtgagacagatcttgaaatgaaattcgaggatgct
gtcaccaagatcaagagagatattgtctttgctgcatctttgtacttatag
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