Salvia miltiorrhiza (redroot sage): 131014399
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Entry
131014399 CDS
T09291
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131014399
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smil03019
]
131014399
03012 Translation factors [BR:
smil03012
]
131014399
Enzymes [BR:
smil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131014399
Messenger RNA biogenesis [BR:
smil03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
131014399
Translation factors [BR:
smil03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
131014399
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_16
AAA_19
T2SSE
ATPase
PhoH
AAA_23
ABC_tran
Myosin_head
Motif
Other DBs
NCBI-GeneID:
131014399
NCBI-ProteinID:
XP_057798337
LinkDB
All DBs
Position
3:53698350..53711754
Genome browser
AA seq
1161 aa
AA seq
DB search
MHSRLRALLARAARKSAALSSPSYLRNPRVVPIADYTTVANAVENYVWSKHQSLSCHSVV
VRRLLCGYAVEQFSDDEYECDYENHPPSSSVANIDEWKWKLSMLLRNDKDQEIISRDKRD
KRDFEQISNLAKSMGLYCQLYGKVIVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVES
LLQEHLDRTTLNSKKAGQTSNKMESSNPAENVDSTEHADPFLDASVMEKVLQRRSLRLRN
MQRTWQESPEGRRMLDFRKTLPAYREKERLLQAIARNQVVVISGETGCGKTTQLPQYILE
ANIESGRGAFCNIICTQPRRISAMTVAERVSAERGEPLGESIGYKVRLEGMKGKNTHLLF
CTSGILLRRLLTDRNLDGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATL
NADLFSNYFGGAPMIHIPGFTYPVRVCFLEDILEMTGYKITSFNQIDDYGQEKLWKTQRQ
LAPRKRKNQITTLVEDALSKSNFENYSSRVQESLSCWIPDSIGFNLLEAVLCHITRKERP
GAVLVFMTGWEDISCLRDQLKAHPLLGDPNRVLLLTCHGSMATSEQKLIFERPPPNVRKI
VLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQ
PGECYHLYPRCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVESIGDFISASLQPPEPLAV
QNAVDFLKMIGALDENENLTHLGKFLSVLPVDPKLGKMLIMGAIFCCFDPILTIVAGLSV
RDPFLLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSLQ
TLQAIHSLRKQFTYILKDAGLLDTDGSNSINNRLSHNQSLVRAVICSGLFPGIVSVVPRE
TTMSFKTMDDGPVLLYANSVNARYQTIQYPWLVFGEKVKVNTVFIRDSTGVSDSILILFG
GKLECGATGGHLKMLEGYVEFFMDPSLAECYLKLKEEADKLLIQKLEHPSMDIHKEGKYL
MLAVQELVSGDQCEGRFVFGRDSKKARESCDKERFTKDGTNPKSLLQTLLMRAGHSPPKY
KTKHLKTNEFRALVEFKGMQFVGKPKKNKALAEKDAAIEALAWLTQTSENNNAEDVNSPP
DVTDNMLKLLGKRRRSKRNPH
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgcattcccggctaagagcgttacttgcacgcgccgccagaaaatccgccgctctttct
tccccttcatatttgcggaatccccgagttgtgcctatcgctgactatactaccgttgcc
aatgctgtggaaaattatgtttggtccaagcaccaaagcttgagttgtcactctgttgta
gtgcggcggctgctctgtggctacgctgtcgagcagttctccgacgatgaatatgaatgc
gattacgaaaaccacccaccgtcatcatcagtggcaaatattgatgagtggaaatggaaa
ctcagcatgttgttgcgaaatgataaagatcaagagattatttctcgagacaaaagagat
aagcgggactttgaacaaatatccaaccttgccaaaagcatggggctttactgtcaactg
tatgggaaagtgatcgtggccagcaaggttcctcttcccaactataggcctgatctggat
gataagcggcctcagagggaggttgttattccattgagcttgcaaagaagggttgagagt
ttgcttcaggaacatcttgacagaacaaccttaaactccaaaaaagctggccagacttca
aataaaatggaatcgagcaatccagctgaaaatgtcgattcaactgaacatgcagaccca
tttcttgacgcttctgtcatggagaaggttttgcagaggcggagcttgcgattgcgtaat
atgcaaagaacttggcaggaatcacctgaaggaagacgtatgctggattttaggaaaacc
ctccctgcatatagggagaaggaaaggcttctccaggcaattgcaaggaatcaggttgtg
gtgatttctggagagactggttgtggtaagactacacaactccctcaatatattttggag
gcaaatatagagtctggcaggggagcattttgtaacataatctgtacacagccccgaaga
atatcagcaatgactgttgcagaaagagtttctgcagagaggggagagcctcttggtgaa
tcaattggatataaagtgcgattagagggaatgaaaggcaagaatacacatttgcttttc
tgtaccagtggaattttgctccgaaggctcttgactgatagaaacctggatggtgtaact
catgtttttgttgatgaaattcatgaacgaggcatgaatgaagatttcttgttgattgtc
ttgaaggatcttctacctcgacgacgggatttgagattaatcttgatgagtgccactctg
aatgctgatctattttctaattattttggtggagcacccatgattcatatccctggtttc
acttatcctgtaagagtctgttttctggaagatatattggaaatgacgggatataagata
acctcattcaaccaaatagatgattatggccaagagaagctttggaagacacaaagacaa
cttgcaccacggaaaagaaaaaatcaaattaccactcttgttgaggatgctctgagtaaa
tcaaattttgagaattatagctctagagtacaagagtcattatcatgctggataccagac
tctattgggttcaacctcttagaggctgtactgtgtcacataactcgcaaggaacgccct
ggggctgtgttggtatttatgaccggatgggaggatattagttgtttgagggatcaatta
aaagctcaccctctcttgggggatccaaatagggtcctgctgcttacatgccatggctca
atggcaacctctgaacagaaactcatatttgagaggccacctcccaacgtacgcaaaata
gtgcttgccacgaatatggctgaggcaagtataacaatcaatgacatagtttttgttgtc
gactgtggaaaagcaaaggagactacttatgatgccctaaataacacaccgtgtctatta
ccttcatggatatcccaagcttctgctcgccaaagaaggggtagggctggccgtgtacag
ccaggcgagtgctaccacctgtatccacgatgtgtatatgaagcttttgctgaatatcaa
ctccctgaacttttaagaactccattgaactctctctgcttgcaaattaaaagtttacaa
gtcgaaagtattggagattttatctctgcttctcttcagccgcctgaaccattggctgtt
caaaatgctgttgattttttgaagatgattggtgctttagatgaaaatgagaaccttact
catcttggaaagttcttgtctgtgcttccggtggatcctaagctggggaaaatgctaatc
atgggtgctatcttttgctgctttgaccctatactgacaattgtcgcgggtctcagtgtc
agggatccttttcttttgcctcaagataaaaaggatttagctggaacggctaagtcaaga
ttctcagcaaaagactatagtgatcatatggctcttgttcgtgcatatgaaggatggaag
gatgcagaaagagaaggatcggcatacgagtattgttggagaaacttcctctctctccaa
actcttcaagctatccattctcttcgtaagcaattcacttacatcttgaaagatgctggg
ttgctagatacagatggatcaaattcaattaataacagattaagtcacaatcaatcgttg
gttcgtgctgtaatatgttctggcttatttcctggcattgtgtctgtagtgcctcgggag
actacaatgtctttcaaaacaatggatgatgggccagtcttgctttatgcgaattctgtg
aatgcacgttaccaaacgatacaatacccctggttggtatttggtgagaaggtgaaagtc
aatactgttttcatacgtgattcaactggagtatctgattctattctgatcctgttcggt
ggtaaactggagtgtggtgctacgggaggacatctgaaaatgttggaaggatatgttgaa
tttttcatggacccaagcttggcagagtgctatctgaaactcaaggaggaggcagataag
ctattaatacaaaagcttgaacatcccagcatggacatccacaaggaaggtaagtacctg
atgcttgctgtccaggagctggtgtcaggcgaccagtgtgaagggaggttcgtctttggt
cgtgatagcaagaaagccagagaatcgtgtgacaaagagaggtttacgaaagacggaaca
aatccaaagagcttgcttcagacactgttgatgagagctggccactcaccacccaagtac
aaaaccaagcatctcaaaacaaatgaattccgggcgctagttgagttcaagggcatgcag
tttgtggggaaaccaaagaaaaataaggccctagcagagaaagatgctgctatagaagca
ttggcatggttaacccaaacatctgagaacaataatgcagaagatgtcaattctccgcct
gatgtcaccgacaacatgctgaaacttcttggcaagcggaggaggtcaaagcgcaatcca
cattaa
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