Salvia miltiorrhiza (redroot sage): 131014968
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Entry
131014968 CDS
T09291
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03013
Nucleocytoplasmic transport
smil03015
mRNA surveillance pathway
smil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131014968
09122 Translation
03013 Nucleocytoplasmic transport
131014968
03015 mRNA surveillance pathway
131014968
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smil03019
]
131014968
03041 Spliceosome [BR:
smil03041
]
131014968
03009 Ribosome biogenesis [BR:
smil03009
]
131014968
03012 Translation factors [BR:
smil03012
]
131014968
Enzymes [BR:
smil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131014968
Messenger RNA biogenesis [BR:
smil03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
131014968
mRNA cycle factors
Stress granule specific factors
131014968
Spliceosome [BR:
smil03041
]
Complex C
Other components
EJC/TREX
131014968
Ribosome biogenesis [BR:
smil03009
]
Eukaryotic type
90S particles
Helicases
131014968
Translation factors [BR:
smil03012
]
Eukaryotic type
Initiation factors
eIF-4
131014968
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
Helicase_RecD
AAA_22
PhoH
CMS1
Motif
Other DBs
NCBI-GeneID:
131014968
NCBI-ProteinID:
XP_057799127
LinkDB
All DBs
Position
3:59905154..59908956
Genome browser
AA seq
409 aa
AA seq
DB search
MAAATGIQRGGGGRRTMVEDDSKLVFETSKGVEPISSFDEMDIKDDLLRGIYNYGFEKPS
AIQQRAVVPIISGRDVIAQAQSGTGKTSMIALAVCQIVDTKSSEVQALILSPTRELASQT
EKVILAIGDYINVQAHACVGGKSVGEDIRKLEHGVQVVSGTPGRVCDMIKRRTLRTRSIK
LLILDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPNEILEITSKFMTDPVRILVK
RDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTAKMRENNF
TVSSMHGDMPQKERDAIMGEFRSGQTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYI
HRIGRSGRFGRKGVAINFVRSDDIKILRDIEQYYSTQIDEMPMNVADLV
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcgacgggtattcagagaggtggcggcgggcggcgaactatggtggaggac
gattcgaagctcgtcttcgagacttcgaaaggcgtggagccgatttcgagcttcgacgag
atggatataaaggacgatctcctcagaggaatctacaactacggcttcgaaaagccttcc
gccattcagcagcgcgcggtcgtaccgattatctccggacgtgacgtcatagctcaggcg
cagtctggcacaggaaagacatcgatgatcgcgctcgctgtttgccagattgtcgatacc
aagtcctcagaagttcaagcgctgatattatcacctacgcgagagttggcttcccagaca
gagaaagtaatattggcaattggtgactatataaatgtacaagctcatgcttgtgttgga
ggcaaaagtgtgggcgaagatattagaaaactagagcatggagttcaagtggtgtcaggc
actcctggcagagtttgtgacatgatcaagaggagaaccttacgcactagatcaatcaag
ttattgatcttggacgagtctgatgaaatgttgagcagagggtttaaggatcagatttat
gatgtatacagatatcttccaccagagcttcaggtggtgttaatctctgctacccttcca
aatgaaatattggagatcacaagcaagttcatgactgacccagttcgtatccttgtaaag
cgcgatgaattgactcttgagggcattaagcaattctttgtggctgtagaaagagaggag
tggaaatttgatacactatgtgatttatatgatacccttacaatcacccaggctgttatc
ttctgtaacacaaaacggaaggtggattggttaactgcaaaaatgcgtgagaataacttt
actgtctcatctatgcacggagatatgccacaaaaggaacgtgatgcaattatgggagag
tttaggtctggccagactcgggttcttatcacaacagatgtgtgggcacggggattggat
gttcaacaggtatctttggtgattaattatgatcttcctaacaaccgtgagctttacatt
caccgcattgggcgatctggccgttttggaagaaagggtgttgccataaatttcgtcaga
agtgatgatatcaaaatcttaagagatatcgaacagtactatagtacacagatcgatgaa
atgcctatgaacgtggctgatttggtttag
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