Salvia miltiorrhiza (redroot sage): 131015359
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Entry
131015359 CDS
T09291
Name
(RefSeq) LOW QUALITY PROTEIN: RNA polymerase sigma factor sigC-like
KO
K03093
RNA polymerase sigma-I factor
Organism
smil
Salvia miltiorrhiza (redroot sage)
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smil03021
]
131015359
Transcription machinery [BR:
smil03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
131015359
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
HTH_31
Motif
Other DBs
NCBI-GeneID:
131015359
NCBI-ProteinID:
XP_057799717
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Position
3:63489096..63492937
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AA seq
561 aa
AA seq
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MGFRLNIKWGGLSVQSPLSTSSSSLPSSYSYRGRDSSCILARVSAASVLYSEAETQNDTS
RAQVSSSSHQLLEKYFMETRELKVALGKGSGDSSVYRLLDTDTRISSNGENSTSVASSRA
MQTSQYRLLMKNLDVLEYMFADSDVVRLERDILEQLERLGALRLFRSFQSRTLISSTSFD
VSNAPTENVDELRANDSVENHAGKVVVRSGKKEVRKSRRNRALEKESAALQELPTEAFSN
NLQRPKFALPRRNSRSRNKKLKIARNEAEMSSGVKMVAGLEKLRMMLERDAGKTPSLSSW
AEAAGVERNELQRQLHYGWHCRGELLRSTRSLVLFIARNYWGLGVAFEDLIQAGRIGVLQ
GAERFDQSRGYKFSTYVQYWIRKSMSTLVARHARGVRIPCTLSKAINQVHKARKSLRRSN
GKYPDDCEIAKFTGLTVAKIVSASKCLRVVGSINEKIGESTSTKYMEIIPDTSTITPKEA
ILRQHMIKDVHTLLNGLDSREREVIILRFGLGNSQCKSLEEIGRRFNVSKEWIRRIERAA
LTKLRNEESLKILNHYVYLSS
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgggttttaggctaaacatcaaatggggcggtctctcagttcaatcgcctctctccaca
agttcatcatctttgccttcttcatattcttatagaggcagggatagttcgtgtattttg
gcaagagtgtctgcagcatctgtcctatatagtgaggccgaaactcaaaatgatacttcg
cgggcgcaagtttcctcgtcttcccatcagcttctggagaagtatttcatggaaactcga
gaattaaaggtggcgcttggcaaagggtctggagatagtagtgtgtacagactacttgat
actgacactcggatttctagcaacggggaaaactcgacatccgttgccagctcacgagca
atgcaaacatcacagtacagattgttgatgaaaaatcttgatgtgttggagtacatgttt
gctgattctgatgtggtaaggttggaacgagatattctggagcaattagaaagacttgga
gctttaagattgttccgttcgtttcaatccaggaccttaatatcttcgacttcttttgat
gtgtctaacgctcccactgagaatgttgacgagctcagggcaaacgattcagtggagaat
cacgcaggcaaggtggttgttcggtctggaaagaaggaagtcagaaaatcgagaagaaat
agagcgttggagaaggaaagtgctgctctgcaagaattgccaacggaagccttctcaaac
aatctccagaggcctaaatttgcgctgcctagaagaaactcgaggtccagaaacaaaaag
ctcaagattgctaggaacgaggcagaaatgtcgagtggagttaagatggttgcaggattg
gaaaaactgaggatgatgctggaaagagacgccggtaaaacgcctagcttgagtagctgg
gccgaagctgctggagttgagaggaacgagctgcaacgtcagttgcattatggttggcat
tgtagaggcgagcttttgagaagcacgcgctccttggttttgtttattgcaagaaattat
tggggactcggagtagcatttgaagatctgattcaggcgggaaggataggtgtgctgcaa
ggtgcagagagatttgatcaatcaagagggtacaaattttcaacctacgtccagtattgg
attaggaagtcgatgtcaacattggtggcgagacatgccagaggagtccgtatcccttgc
actttaagcaaggccataaatcaagtgcataaagcacgaaagtcccttcgtaggagcaac
ggaaaatatccagacgactgtgaaatcgctaagtttactggtctgaccgtagctaaaatc
gtctcggctagcaaatgcctcagagttgtgggatcaatcaatgagaaaataggggaatcc
accagcactaagtatatggagatcataccagatacatcgacaataacccccaaagaggcg
attctcagacaacatatgatcaaggatgtacacacacttctcaatggcttagattcaaga
gagagagaggtaataatcctgagattcggattaggtaacagtcagtgcaaatcgctcgag
gaaataggaaggcgtttcaatgtgagcaaagagtggataagaagaatagagagggctgct
cttacaaaactgagaaatgaagaatctctcaaaattttgaaccactatgtatatctgagt
agttag
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