Salvia miltiorrhiza (redroot sage): 131016219
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Entry
131016219 CDS
T09291
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03022
Basal transcription factors
smil03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
131016219
09124 Replication and repair
03420 Nucleotide excision repair
131016219
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smil03021
]
131016219
03036 Chromosome and associated proteins [BR:
smil03036
]
131016219
03400 DNA repair and recombination proteins [BR:
smil03400
]
131016219
Enzymes [BR:
smil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
131016219
Transcription machinery [BR:
smil03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
131016219
Chromosome and associated proteins [BR:
smil03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
131016219
DNA repair and recombination proteins [BR:
smil03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
131016219
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
ResIII
DEAD
SNF2-rel_dom
NAMPT_N
AAA_11
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
131016219
NCBI-ProteinID:
XP_057800842
LinkDB
All DBs
Position
3:complement(47770895..47776515)
Genome browser
AA seq
757 aa
AA seq
DB search
MKFQIEDVTVYFPYDNIYPEQYSYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV
LAKPSNPVKLLYCTRTVHEMEKTLAELRFLHDYQVKELGPSARILALGLSSRKNLCVNPR
VVSAENRDSVDAACRKLTASWVRAVAVENPDIPTCEFFENYEKAASDAVLPPGVYTLQDL
RTFGKQKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQRESVVVFDEAHNID
NVCIEALSVNVRMQTLDGASRNLSRMSQEIERLKATDAGRLRAEYNRLVDGLAQRGDLPT
GDTWLANPALPEDILKEAVPGNIRRAEHFLSVLRRFVQYLKGRLQTENVEKEGPVTFVAS
INAQVGIDQKMLKFCYDRLHSLMLTLEITDTDEFLHIQTICDLATLVGTYTRGFSIIIEP
FDERMPHIPDPVLQLCCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
FTMSLTRDCICPMVLTRGSDQLPVSTKYDLRSDPGVEKNYGKLLLEMVSVVPDGIVCFFV
SYSYMDGIVNSWHESGILKEIMQHKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVA
RGKVAEGIDFDRHYGRLVIMFGIPFQYTLSRILLARLEYLRETFQIKEGDFLTFDALRQA
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPSWILSHLRDAHLNLSTDMAVHIAREF
LRKMAQPYDKSGAMGKRTLLSQEDLEKMVNGVGEMVF
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atgaagttccaaatcgaagacgtaaccgtatacttcccttacgacaacatctacccggag
cagtactcgtacatggtggagctcaaacgcgccctcgacgccaagggccactgccttctc
gaaatgccgaccggcaccgggaaaaccatcgcgcttctctctctaatcaccagctatgtt
ctcgccaaaccctccaatccggtgaagctcctctactgcacccgcactgtgcacgagatg
gagaaaaccctagcggagttgaggtttttgcacgactatcaggtcaaggaattggggccg
tcggcgaggattctggcgttggggctctcctcgaggaagaacttgtgtgtcaatccacgc
gttgtgtcggcggagaatcgggattcggtggatgctgcgtgtaggaagctcacggcgagt
tgggttagggcagtggccgttgagaatcctgatatcccgacgtgtgagttttttgagaac
tacgagaaggctgcatctgatgcggtgttacctcctggagtttatacgttgcaggattta
aggacatttgggaaacaaaaggggtggtgcccgtactttctagcacgccatatggttcaa
tttgcaaatgtagtggtatatagttatcagtacctgcttgatcctaaagttgctggaatc
atatcgaaggagatgcagagggagtccgttgtggtgtttgatgaggcccataatattgac
aatgtgtgcatcgaggcacttagtgttaatgtgaggatgcaaacacttgatggggcatca
aggaatctgagtaggatgtcccaggagattgagaggttaaaggccaccgatgctggtcga
ctgcgtgcagagtacaaccggcttgttgatggtttggcacagcgaggggaccttcctact
ggtgatacatggcttgcaaatcctgccttgcctgaggacatactaaaggaagcagtacct
ggaaatataaggcgtgcagagcactttttgtcagttttgcgtaggtttgtacaatatctt
aaaggacgactgcagacggaaaatgttgagaaggaggggcctgttacatttgttgcatca
atcaatgcacaagttggaattgaccagaaaatgttgaagttttgttatgatcgacttcac
tcgcttatgttaaccttggagataactgacactgatgaatttctacacatccaaacaatc
tgtgatctggcaactcttgtggggacctacactcgaggattttctattataattgaacct
tttgatgaaaggatgccacacatacctgatcctgttcttcagctttgttgtcatgatgct
tctcttgccataaagcccgtatttgagcgatttcagtcagttgttattacatctggaaca
ctgagccccattgatctctacccccgtcttcttaatttcaatcccgtggttagccgaagc
tttacaatgtccttaactagggattgcatatgcccaatggttctcactcgtggaagtgat
cagcttccagtgagcacaaaatatgatcttcgaagtgaccctggtgtagagaaaaattat
ggcaaacttttgctagaaatggtatctgttgttccagatggaatcgtgtgcttttttgtc
agttattcttacatggatggaattgttaatagttggcatgaatcaggcattctgaaggaa
attatgcaacataaacttgttttcatagagactcaggatgttgttgaaactactcttgcg
ctcgacaattatcgtagagcttgtgattgtggaagaggcgccgtctttttctcagttgcc
agggggaaagtggcagaaggtatagattttgatagacattatggccgacttgttatcatg
tttggcatcccattccagtatacattaagcagaatattactagcacgattggagtatttg
cgggagactttccagataaaggagggtgattttttgacattcgatgctttgaggcaagct
gcccaatgcgtaggacgagtcatcaggtcaaaagcagattatgggatgatgattttcgct
gacaagagatatagtcgtcatgacaagcgctcaaagctgcctagctggatactctcacat
ctgcgcgatgcacacctcaacttgagtaccgacatggctgtgcatattgcaagagagttc
ttgagaaagatggctcaaccatacgataagagtggagcaatgggtaaaagaacccttctt
tcacaagaagacttggagaagatggtcaatggcgttggagaaatggtgttttga
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integrated database retrieval system
