Salvia miltiorrhiza (redroot sage): 131017800
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Entry
131017800 CDS
T09291
Name
(RefSeq) sm-like protein LSM5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03018
RNA degradation
smil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131017800
09123 Folding, sorting and degradation
03018 RNA degradation
131017800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smil03019
]
131017800
03041 Spliceosome [BR:
smil03041
]
131017800
Messenger RNA biogenesis [BR:
smil03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
131017800
mRNA degradation factors
5'-3' decay
Lsm complex
131017800
Spliceosome [BR:
smil03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
131017800
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF7452
Motif
Other DBs
NCBI-GeneID:
131017800
NCBI-ProteinID:
XP_057802514
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Position
3:complement(15132815..15149143)
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AA seq
88 aa
AA seq
DB search
MSSNNPSQLLPLELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEG
CRITKLDQILLNGNNIAILVPGGSPDPE
NT seq
267 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtctaacaatccatcgcagctcctcccattagagttgattgaccgatgcatcggg
tcgaaaatatgggtgataatgaagggcgacaaggagctggtgggtaccctccgcggcttc
gatgtctatgttaatatggtgttggaagatgttactgaatatgaaatcacctctgaagga
tgtcgtattacaaaacttgaccagatcttactcaacggcaacaacattgccatattggtt
cctggtggctcgcctgacccggagtga
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