KEGG   Salvia miltiorrhiza (redroot sage): 131017800
Entry
131017800         CDS       T09291                                 
Name
(RefSeq) sm-like protein LSM5
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
smil  Salvia miltiorrhiza (redroot sage)
Pathway
smil03018  RNA degradation
smil03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:smil00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    131017800
  09123 Folding, sorting and degradation
   03018 RNA degradation
    131017800
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smil03019]
    131017800
   03041 Spliceosome [BR:smil03041]
    131017800
Messenger RNA biogenesis [BR:smil03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     131017800
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     131017800
Spliceosome [BR:smil03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    131017800
SSDB
Motif
Pfam: LSM DUF7452
Other DBs
NCBI-GeneID: 131017800
NCBI-ProteinID: XP_057802514
LinkDB
Position
3:complement(15132815..15149143)
AA seq 88 aa
MSSNNPSQLLPLELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEG
CRITKLDQILLNGNNIAILVPGGSPDPE
NT seq 267 nt   +upstreamnt  +downstreamnt
atgtcgtctaacaatccatcgcagctcctcccattagagttgattgaccgatgcatcggg
tcgaaaatatgggtgataatgaagggcgacaaggagctggtgggtaccctccgcggcttc
gatgtctatgttaatatggtgttggaagatgttactgaatatgaaatcacctctgaagga
tgtcgtattacaaaacttgaccagatcttactcaacggcaacaacattgccatattggtt
cctggtggctcgcctgacccggagtga

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