KEGG   Salvia miltiorrhiza (redroot sage): 131019434
Entry
131019434         CDS       T09291                                 
Name
(RefSeq) protein RAE1-like isoform X1
  KO
K14298  mRNA export factor
Organism
smil  Salvia miltiorrhiza (redroot sage)
Pathway
smil03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:smil00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    131019434
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smil03019]
    131019434
   03036 Chromosome and associated proteins [BR:smil03036]
    131019434
Messenger RNA biogenesis [BR:smil03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     131019434
Chromosome and associated proteins [BR:smil03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    131019434
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz WDR55 Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_EML EIF3I Beta-prop_TEP1_C Beta-prop_SPT8 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_HPS5 Beta-prop_DCAF12 Beta-prop_IFT140_1st Beta-prop_EIPR1 Beta-prop_WDR75_2nd Beta-prop_IFT122_1st Beta-prop_Nup120_160
Other DBs
NCBI-GeneID: 131019434
NCBI-ProteinID: XP_057803957
LinkDB
Position
4:complement(22626228..22632741)
AA seq 365 aa
MATFGASTTNANPNRSTEVLSPPSDSVSSLCFSSKANHLVATSWDNQVRCWEVMKSGTTV
NTVPKASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPVKELA
WIPEMSLLVTGSWDKTLRYWDLRQQNPTWVQQLPERCYALTVKHPLMVVGTADRNLVVFN
LQNPQTEFKRVVSPLKYQTRCLAAFPDQQGFLVGSIEGRVGVHHLDDAQSSKNFTFKCHR
DGNDIYSVNSLNFHPVHQTFATAGSDGAFNFWDKDSKQRLKAMLRCSQPIPCSTFNHDGS
IFAYSVCYDWSKGAENHNPSAAKTNIYLHLPQVQFMISNLCFGFSSLILMSPVLKMNIVS
FVAGG
NT seq 1098 nt   +upstreamnt  +downstreamnt
atggctacattcggcgcttcaacgactaacgccaatcctaatcgttcgactgaggtgttg
tcacctccgagtgattcagtttcgagcctgtgttttagttctaaggccaatcatttggtc
gctacgtcgtgggataatcaggtacgatgttgggaggtgatgaaatcaggaaccactgtg
aacactgtacctaaggcttcaatatcacatgatcaaccggtcttatgctcagcttggaag
gatgatggaacaactgtattttctggtggctgtgacaaacaagtcaagatgtggccatta
ttatctggtggccaacctgttactgtagccatgcatgatgctcctgttaaagagcttgct
tggatcccagaaatgagtctcttagtcacaggaagctgggataagacacttaggtattgg
gatctgagacagcagaatccaacttgggtgcagcagcttcctgaacgctgctatgcgctt
actgttaaacatcctcttatggttgttggcactgcagatagaaatcttgtagttttcaac
ctgcagaaccctcagacagagttcaagagagtcgtgtcaccattgaagtaccagactagg
tgtttagctgcattcccagatcagcaaggcttcttagttggctcaattgaaggcagagtt
ggggtacaccaccttgatgatgcacaatcaagtaaaaattttactttcaaatgtcacaga
gatggcaatgacatttactctgtcaactcactgaattttcatcctgtacaccagacattt
gcaactgctggatccgatggtgcctttaacttttgggacaaagatagcaaacagaggctt
aaggctatgctgaggtgcagtcagccaataccttgcagcactttcaaccatgacggatca
atatttgcatactcggtttgttacgactggagcaaaggtgctgaaaatcacaatccatca
gcagcaaagaccaatatttacctacatctgccccaggtgcagttcatgatttcgaactta
tgttttggtttctcttctctcattctcatgagtccagtgcttaaaatgaacattgtatct
ttcgtcgcaggaggctga

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