Salvia miltiorrhiza (redroot sage): 131019709
Help
Entry
131019709 CDS
T09291
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131019709
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smil03041
]
131019709
03009 Ribosome biogenesis [BR:
smil03009
]
131019709
Enzymes [BR:
smil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131019709
Spliceosome [BR:
smil03041
]
Complex A
U1 snRNP components
U1 related factors
131019709
Complex B
131019709
Ribosome biogenesis [BR:
smil03009
]
Eukaryotic type
Pre-60S particles
Helicases
131019709
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
131019709
NCBI-ProteinID:
XP_057804283
LinkDB
All DBs
Position
4:29945671..29949750
Genome browser
AA seq
625 aa
AA seq
DB search
MFSNHDSRLHDAGSYRQRRVDLVGPPPMMIPPPVPGGAPPSYGRGAPQVAPPYMVGGARS
GYQMEHGIGRGFGAGHSSNFADRGRGGGGGWFGGRGHINNGVGDRRGDGGGREGGRGSHF
SGRSFDHGRGGGFSGGRGGRGSRQRGDDLDNISLPKPDFSGLIPFEKDFYVESPSVRAMT
EQEVMMYRARREITVEGQGVPKPIRVFEEASFPGYCLEVIARLGFVEPTPIQSQGWPMAL
RGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLAQGDGPIVLVLAPTRELAIQIQEEAVK
FGSVANIRSTCIYGGAPKGPQIRDLKRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDE
ADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVETLARQFLRNAYKVIVGSQELKA
NQSIHQIVEVMTDMEKYNRLIRLLNEVMDGSKILIFVETKKGCDQVTRQLRMDGWPALSI
HGDKNQDERDWVLAEFKSSRTPIMIATDVAARGLDVKDIKVVVNYDFPSNLEDYVHRIGR
TGRAGATGTAFTFFTHANVKHTRELIKILQQAGQAVPPQLAALARSGGSDIGGPGRNFRS
RGRGGGGFGNRSGSNVIPIGGRRPY
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgttcagcaaccacgattctagactccacgacgccggctcttaccgacagcgccgagtt
gatttagttgggccaccaccgatgatgattccgccccctgtgccaggtggtgctccgccc
agctatggccgtggagctcctcaggtggcacccccatatatggtgggtggtgctaggagt
ggatatcagatggagcatggtattggaagagggtttggggctggtcatagtagtaatttt
gctgaccgaggtagaggtggaggtggaggatggtttggtggtagaggacatatcaataat
ggcgtaggagatagaagaggcgatgggggtggccgtgaaggtgggagaggaagtcatttc
tctggaaggagttttgatcatggtcgtggtggcggctttagtggaggtcgtggtggcaga
ggaagtaggcagaggggggatgacttggataacatttctcttcctaaaccagattttagt
gggttgattccctttgaaaaggatttttatgtggagagcccatctgtgagggcgatgact
gagcaggaggttatgatgtatcgtgcacgtcgggagattactgttgaagggcaaggtgtc
cccaagcctatccgggtgtttgaagaagcaagtttccctggttactgccttgaggtaatt
gccagactgggttttgttgagccaacacctattcaatcacaaggatggccaatggcatta
agaggtcgagatcttataggcatcgctgagactggttctggaaaaactttgtcgtatttg
ctgcctgcttttgttcatgttagtgctcagcctaggttggcacaaggtgatggtcccatt
gtactagtcctagcacctactagagaattagctattcagattcaagaagaagctgtgaag
tttggatcagttgctaacataagaagcacttgtatatatggcggtgccccaaagggccca
caaattcgtgaccttaaaagaggagttgaaattgtcatagctacacctggtagattgatt
gatatgttggaagctcagcacaccaacttgagaagagtgacttaccttgtactcgatgag
gctgatcgcatgctagatatgggattcgaaccccaaatcaggaaaattgtgtctcagatt
cgtccagatagacagaccctgtactggagtgccacatggcctagggaggtggaaactttg
gcaagacagttcctacgcaatgcttacaaggttatcgttgggtctcaagaactgaaagca
aatcaatctatacatcaaattgttgaagttatgactgatatggagaaatataataggttg
atcagattgctgaatgaagtgatggatggaagtaaaattttaatttttgtggagactaaa
aagggttgtgatcaagttacaagacaactaagaatggatggatggccagctctgtccata
catggtgacaagaatcaggacgaaagggattgggtcctagcagagtttaaaagtagcaga
actcctataatgattgccactgatgttgctgctcgtggccttgatgtgaaggacataaaa
gtcgtcgtcaactatgatttcccttcaaatttggaggattatgtccataggattggccga
actggtcgtgcaggagccacaggaactgctttcacatttttcacacatgcaaatgtgaag
cacacaagagaacttatcaagattctgcaacaagctgggcaagccgtgccgcctcagctt
gctgctttggcacgaagtggtggatcagatatcggagggcccgggcgtaacttccgatcc
agaggccgaggcggaggtggctttggcaaccgttccgggtctaatgtaatacctatcggt
ggaagaaggccttattag
DBGET
integrated database retrieval system
