Salvia miltiorrhiza (redroot sage): 131020018
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Entry
131020018 CDS
T09291
Name
(RefSeq) clathrin heavy chain 2-like isoform X1
KO
K04646
clathrin heavy chain
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil04142
Lysosome
smil04144
Endocytosis
smil05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
131020018
04142 Lysosome
131020018
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
131020018
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smil04131
]
131020018
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
smil04147
]
131020018
Membrane trafficking [BR:
smil04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
131020018
Exosome [BR:
smil04147
]
Exosomal proteins
Proteins found in most exosomes
131020018
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
Motif
Other DBs
NCBI-GeneID:
131020018
NCBI-ProteinID:
XP_057804631
LinkDB
All DBs
Position
4:26342507..26355706
Genome browser
AA seq
1731 aa
AA seq
DB search
MAAANAPITMKEALTLTSLGINPQFITFTNVTMESDKYICVRETAPQNSVVIIDMSMPSQ
PLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIEAKAKMKSHQMPEQVVFWKWI
TPKMLGLVTQSSVYHWSIEGDSEPVKMFDRTANLANNQIINYKCDPSEKWLVLIGIAPGS
PERPQLVKGNMQLFSVDQQRSQALEAHAASFASFKIAGNDKDSILISFASKSSNAGQVTS
KLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDL
ETATAVYRNRISPDPIFLTSEASSIGGFYAINRRGQVLLATVNDATIVPFVSGQLNNLEL
AVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAESPQGILRTPETVSKFQSVPVQ
AGQTPPLLQYFGTLLTKGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLV
KTVDNDLALKIFIKARVTPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRSDPQ
GAVNFALMMSQMEGGCPVDYNTITDLFLQRNMIREATAFLLDVLKPNLPEHAHLQTKVLE
INLVTFPNVADAILANGMFSHYDRPRVAQLCEKAGLYVRALQHYSELPDIKRVIVNTHAI
EPQVMKIQLYLSFSLNGYSMLNDMYAFQALVEFFGTLSKEWALECMKDLLLVNLRGNLQI
IVQTAKEYCEQLGVEACIRLFEQFKSYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQI
KEVERVTRESNFYDPEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIE
GYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQF
LEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAY
RRGQCDDELINVTNKNSLFKLQARYVVERMDGDLWAKVLDPENEFRRLLIDQVVSTALPE
SKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVM
DYVNRLDNFDGPAVGEVAVDAQLYEEAYAIFKKFNLNVQAVNVLLDNIRDINRAVEFAYR
VEEDAVWSQVAKAQLRDGLVSDAIESFIRADDATQFLEVIRAAEDADVYHDLVKYLLMVR
QKAKEPKVDSELIYAYAKIDRLGEIEEFILMPNVANLPNVGDRLYDETLYEAAKIIFAFI
SNWGKLASTLVKLKQFQGAVDAARKANSAKTWKEICFACVDAEEFRLAQICGLNIIVQVD
DLEEVSEYYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRHEKLMEHIKLFST
RLNIPKLIRACDEQQHWLELTYLYVQYDEFDNAATTVMNHSPEAWDHMQFKDIIVKVANV
ELYYKAVHFYLQEHPDLINDVLNVLALRVDHTRVVDIMRKAGHLRLVKPYMVAVQSNNVS
AVNEALNEIYVEDEDYERLRESIDLHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRW
RQSIALSKKDNLYKDAMETASQSGDRELAEELLIYFIEQGKKECFASCLFVCYDLIRPDV
ALELAWMNNMIDFAFPYLLQFIREYTGKVDDLVKDKIEAIKEEKAKKEEEKDVVLQQNMY
AQLLPLALPAPPMPGMGAPGMGGGFAAPPPPMGGMGMPPMPPFGMPQMGSY
NT seq
5196 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgccaatgctccgatcaccatgaaagaagcgcttacgttgactagcttaggg
atcaatccccagttcattacttttacaaatgtgacgatggaatctgataagtacatctgt
gttcgtgagactgctccacaaaacagcgtggtgattatcgatatgagcatgccatcacaa
ccacttcggcggcccattacagccgattcagcacttatgaatccaaattctagaattttg
gcattgaaagctcaacttcccggaaccactcaagaccacctgcaaatatttaatattgag
gcaaaagcaaagatgaagtcccatcagatgcctgagcaggttgtattttggaagtggata
actcctaagatgttgggtttagttacgcagtcctcagtttatcactggtcaatcgaaggt
gactcggaacctgtaaagatgttcgatagaactgcaaatttagcaaacaaccagataatc
aattataaatgtgatccttctgaaaagtggttggttttgattgggattgctcctggttca
cccgagcggcctcaattggtcaaaggaaatatgcagctgttttctgtggatcagcaaaga
agccaagctcttgaagctcatgctgcatcatttgcttctttcaaaatagctgggaatgat
aaggactccatccttatttcttttgcttcaaaaagctctaatgctggtcaggtgacatcg
aagttgcatgttattgagcttggtgctcagccaggaaaaccatctttcactaaaaaacaa
gcagatctgttcttccctccagactttgccgatgattttccagtagccatgcagatatca
cataagtatggccttatatatgtgattacgaagcttgggttactctttgtatatgatcta
gaaactgccacagcagtatacagaaatagaattagtccggatcccatttttctgacatca
gaagcttcatctatcggaggtttttatgcgattaataggcgggggcaggtgttacttgcc
acagtaaatgatgcaactattgtgccttttgtcagtggtcaattaaacaatctggagctt
gctgtcaatcttgctaaaagaggaaacctccccggcgctgagaatttggttgtccagcgt
ttccaagaattatttgctcagaccaagtataaagaggctgcggagctggctgcagaatct
ccccaaggcatcctccggactcctgaaactgtttccaaatttcagagcgttcccgttcaa
gctgggcagacaccaccattgctgcagtactttggaactttgttgactaaaggaaagctt
aatgcattcgaatctcttgagttatctcgtcttgttgtcaaccaaaacaaaaagaattta
ttagagaactggttggctgaagataaactggagtgtagcgaggaactgggagaccttgta
aagacggttgacaatgaccttgccctgaagatatttatcaaagctagagttacaccaaaa
gttgttgcagcatttgctgagcgtcgggagtttgacaaaatcttaatatactcaaagcag
gttggctatactcctgattacctgttccttctgcaaacaattctccggtctgatcctcag
ggagctgttaattttgcccttatgatgtctcaaatggaaggaggttgccccgttgattac
aacaccattactgatctatttcttcagaggaatatgattcgtgaagcaactgcatttctg
ttggatgtcctgaaacctaatctaccagagcatgcacacctgcaaactaaggtcctggaa
atcaatcttgtgacttttcccaatgttgctgatgctattttggcaaatgggatgtttagt
cactatgacagaccacgcgttgcacaactctgtgagaaagcaggtctttacgtgcgagca
cttcagcattattcggagctgcctgatatcaagcgtgtcattgttaatactcatgcgatt
gagccacaggttatgaaaatccaattatatctgtctttttctctaaatggttattcaatg
cttaatgatatgtatgcatttcaggcactcgtggaattctttggtactctttccaaagaa
tgggcactggagtgcatgaaagatcttctactggtcaatttaagaggaaaccttcagatt
attgtccagactgctaaagagtactgtgaacaattgggagttgaagcatgcataaggctg
tttgagcagttcaagtcctatgaaggactatacttctttttggggtcgtacttgagctcc
agtgaggatcctgacattcatttcaagtacattgaagcagctgctaagacgggacagatt
aaagaggtcgagcgtgttacaagagaatcaaatttctatgatcctgaaaagactaagaac
tttttaatggaagcaaaacttcctgatgctcggccactgatcaatgtgtgtgaccgcttt
ggttttgttccggacctcacacattacttgtacaccaacaacatgctccgctacattgaa
ggatatgtacagaaggttaatccaggaaatgctccattagttgttgggcagctcctagat
gatgagtgccctgaagatttcattaaaggcctgattttgtctgtccgttcgctgctccca
gttgagcctctggtggaggagtgtgaaaaaaggaaccgacttcgtctacttactcaattt
ttggagcatcttgtgagtgaaggaagccaagatgtacatgtacacaatgctctgggtaaa
atcattatagatagcaacaacaatccagagcactttctcacaacaaatccgtactatgat
tcacgtgttgtgggtaaatactgtgagaagcgtgatcctacccttgctgttgtcgcatac
cggagaggacaatgtgatgatgagcttattaacgtgactaataagaattcattgttcaag
ctgcaggccaggtatgttgttgaaagaatggatggtgatctctgggccaaagttcttgat
cctgaaaatgaatttagaaggctgctcattgatcaagttgtatccactgctttgccagaa
agcaaaagtcctgagcaagtttctgcagctgttaaagcgtttatgactgctgatcttcct
catgaactaattgaattgcttgaaaagattgtgcttcaaaactcagctttcagcgggaac
ttcaacttgcaaaacttacttatcttgactgctatcaaggctgatccatctagggttatg
gactatgttaatagacttgataactttgatggcccggctgttggagaggtggctgtggat
gctcaattgtatgaagaagcttatgctattttcaagaaatttaatttgaatgtccaggct
gttaatgtgttgttggataatattcgagacatcaaccgtgctgtagaatttgcttaccgt
gttgaagaagatgccgtctggagtcaagtggctaaagctcaactcagggacgggctagtg
agtgatgcaatcgaatcatttattcgtgctgatgatgcaactcaatttttggaagtcatc
cgagctgcagaggatgcagatgtgtatcatgaccttgtaaagtatcttcttatggttagg
cagaaagcaaaggagcctaaagtagacagtgagcttatttatgcatatgctaaaattgat
aggctgggtgaaattgaagaatttattcttatgcctaatgtggccaatctgcctaatgtt
ggtgatcgcttgtatgatgaaactctatatgaggctgcaaaaattatttttgctttcatc
tccaattggggcaaattggcaagtactttagtaaaattaaagcaattccaaggtgctgtt
gatgctgcgcggaaagctaatagcgcaaagacatggaaggaaatatgctttgcctgtgtt
gatgctgaggagttccgcttggctcaaatttgtggcctcaacattattgtacaggttgat
gaccttgaagaggttagcgagtattatcagaatagaggatgctttaatgagctcatatct
cttatggagagtggtctaggattggaacgtgcacatatgggcatctttacagagctgggt
gtcctttatgctagatatcgccatgagaagctcatggagcacatcaaattgttttctact
cgtctcaatattcccaaactgattcgtgcatgtgatgaacagcagcactggctagaactg
acttacttatatgttcagtacgatgagtttgataatgctgcaacaactgtgatgaatcat
tccccagaagcttgggatcacatgcaattcaaagatattattgtcaaagttgccaatgtg
gagctatattacaaagctgtgcacttttacttgcaagagcaccctgatctcatcaatgat
gttctcaatgtgcttgctcttcgcgtagatcatacccgtgttgtggacataatgagaaag
gcgggccacctgcgtcttgttaagccatacatggtagccgttcaaagcaataatgtctct
gccgtcaatgaagctctcaatgagatctatgttgaagatgaggattatgagaggctacgt
gaatcaattgacttgcatgataactttgatcagatcggccttgctcaaaagatcgagaaa
catgaacttcttgaaatgagacgagttgctgcatacatttacaagaaggccgggaggtgg
aggcaatcaattgccttgtcaaagaaagacaacctttacaaagatgcaatggagacggct
tcacaatctggtgatcgtgaactggcagaggagttgcttatttatttcattgaacagggt
aagaaggagtgcttcgcgtcgtgcctctttgtctgctatgatttaattcgcccagatgtt
gcacttgaactcgcctggatgaataacatgattgattttgcattcccgtatcttttacag
tttatccgggaatacactggcaaagttgatgatttggttaaggacaagattgaggctatc
aaagaagagaaggctaaaaaggaagaagagaaagatgttgtcctgcaacagaatatgtat
gcccaactgcttcctcttgctttgccggcgcctcctatgccgggcatgggagctccagga
atgggagggggctttgctgctcctcccccacccatgggtggtatgggcatgcctccaatg
cccccatttggcatgccacaaatggggtcctactga
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