Salvia miltiorrhiza (redroot sage): 131020043
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Entry
131020043 CDS
T09291
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 18
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
smil
Salvia miltiorrhiza (redroot sage)
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
smil03009
]
131020043
Enzymes [BR:
smil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131020043
Ribosome biogenesis [BR:
smil03009
]
Eukaryotic type
Pre-60S particles
Helicases
131020043
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF4217
ResIII
RNA_pol_Rpc4
Motif
Other DBs
NCBI-GeneID:
131020043
NCBI-ProteinID:
XP_057804658
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Position
4:complement(26809358..26816398)
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AA seq
590 aa
AA seq
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MAAVDDNNPNKALTTTRFSDLDPPLSQPVLEALSAAAFEFCTPVQAATIPLLCTYKDVAV
DAATGSGKTLAFVLPLVEILRRAARPKLHQVVGVVISPTRELSSQIFKVAEPFIATLSNV
RPVLLVGGAEVKADMTKIEEEGANLLIGTPGRLNDIMEHMDMLDFRNLEILILDEADRLL
DMGFQKQISSIISRLPKLRRTGLFSATQTEAVEELSRAGLRNPVRVEVRSEIKRPKDITS
SQQIASSRTPSGLQMEYFQCEADQKPLQLVDFLHKNKTQKIIIYFMTCACVDYWGAVLPR
LSLLKGFSLIPLHGKMKQAAREKALASFTSLSSGILLCTDVAARGLDIPGVDCIIQYDPP
QDPNVFIHRVGRTARMGRQGTAIVFLLPKEEAYIEFLRIRRVPLEERQCSDEAPNIIPQI
RLAAKKDREIMEKGVKAFVSYVRAYKEHQCSFIFRWKELEIGKLGMGYGLLQLPSMPEVR
HYSLSTQGFVPAEDIKLEDIKYKEKSREKQRKKNLAAKQAAKEQKQQESKAKTNASSSVA
TSKKTAKQRRAVQSTEDADDLDRDYRLLKKLKKGRIDENEFAKLTGTEDL
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgtcgatgacaataacccaaacaaagccctcaccaccaccaggttctccgac
ctcgacccgccgctctcccaaccagtgctggaagctctctccgccgccgctttcgaattc
tgcacaccggttcaggccgcaaccatacccttgctatgcacctacaaagacgttgcagtc
gacgccgccacaggctctgggaaaaccctagccttcgtcctccccctcgtcgaaatcctc
cgccgcgccgcccgtcccaaactccaccaggtagtaggagtagtaatttctcccactagg
gagttgtcatcacagatatttaaagttgcagagccgtttattgcgacattatcaaatgtt
aggccagtgctattagttgggggagctgaagtgaaagctgatatgactaaaattgaagag
gaaggggctaatttgttaattgggacgcctggacgactaaatgatataatggagcatatg
gatatgctggactttcgaaacctggagatattgatcctggatgaagctgatcggttgtta
gatatgggattccagaaacagataagttcaatcatatctcgcttaccgaagcttcgtagg
actggccttttttcagctactcaaactgaagcagttgaagagctgtctagagcaggatta
agaaatcccgtgagggtagaagtgcgatccgaaataaaaagaccaaaggatataacctct
tcacaacaaattgcctcttcaagaactccttcagggcttcaaatggagtattttcaatgt
gaagcagaccagaaacctttacagctggtcgatttcctccataaaaacaaaacccagaaa
ataattatttattttatgacttgtgcctgtgttgattactggggagctgtacttccacga
ctttccttattgaaaggattctctttgatccctcttcatggaaagatgaagcaggcggcc
agggagaaggcattagcatcatttacatctctttcaagcggcattcttctttgcactgat
gtagcagctcgtgggcttgacattcctggtgttgactgcattatacagtatgacccccca
caggaccccaatgtgttcatacacagagttggccgaactgcccggatgggacgacaagga
actgctattgtcttcttgttgccaaaggaggaagcatatatagaattccttaggataagg
agagttccactcgaagagagacaatgctctgatgaggctcccaatatcatacctcagata
cgtttagcagccaaaaaggaccgtgaaattatggagaaaggagtcaaggcctttgtatct
tatgtccgtgcttataaagaacaccaatgctcttttatcttcaggtggaaagaacttgaa
attgggaagttggggatgggatatggtctgttgcagctcccttcgatgcctgaagtaaga
cactactctctgtccacccaaggttttgttccagctgaagatataaaactggaggatatc
aagtacaaagagaagtctcgtgaaaagcaaaggaagaaaaacctggcagcgaagcaggct
gcaaaagagcaaaagcagcaggagtctaaagcaaaaacaaatgcttcgagctctgtggcc
acgagtaagaaaacagccaaacagagacgtgcagttcaatcaacagaagatgcagatgat
ctagaccgggattatcgcctactgaagaagttgaaaaaaggcaggatcgatgaaaatgag
tttgcaaaattaaccggaactgaggatctatga
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