Salvia miltiorrhiza (redroot sage): 131020488
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Entry
131020488 CDS
T09291
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131020488
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smil03019
]
131020488
03012 Translation factors [BR:
smil03012
]
131020488
Enzymes [BR:
smil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131020488
Messenger RNA biogenesis [BR:
smil03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
131020488
Translation factors [BR:
smil03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
131020488
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
T2SSE
NPHP3_N
AAA_19
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
131020488
NCBI-ProteinID:
XP_057805318
LinkDB
All DBs
Position
4:complement(52635040..52644239)
Genome browser
AA seq
1040 aa
AA seq
DB search
MSRRLLPNPFRHNYRVFTHAPLPLSPAAPPPLVGNPEIKFVRISNCSSMSYRPNAQGGRR
GGRGGGRGGGGAGRGGGRGGRGEQRWWDPAWRAERLRQMSAEKETMDQNEWWGKIEQMKT
GNEQEMVIRRNFGRDDQQILADMAYQLGLHFHAYNKGKALVVSKVPLPNYRADLDEQHGS
TKKEITMSTETEERVGLLLKSSNGTNLVQNNSSSSSGSATCQSKPAEMEREASLPYIDTD
FERLSLDLKQKQEKMREGDSVKAMLAFREKLPAFKVKSEFLKAVASNQVLVVSGETGCGK
TTQLPQFILEEEISSLRGASCNIICTQPRRISAISVAARISAERGEELGETVGYQIRLES
KRSAQTRLLFCTTGVLLRQLVQDPDLTGITHLLVDEIHERGMNEDFLLIILRDILPRRPN
LRVILMSATINAELFSKYFGNAPTTHIPGLTFPVKELYLEDLLEKTRYTVQPESDNLPRN
SRRGRRQQESSKDPLTELFENADIDVLYKSYSASTRQSLEAWSGSQLDLGLVEATIEHIC
RHEGAGAILVFLTGWDDISKLLDKLRANLFVGDPNKFLVLPLHGSMPTINQREIFDRPPH
NVRKIVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGR
AGRVQPGVCYRLYPKLIHDAMTQYQLPEMLRTPLQELCLHIKSLQLGVVSTFLSKAIQPP
DPLSVENAIELLKTIGALDDREELTPLGQHLSTLPLDPNIGKMLLMGSIFQCLNPALTIA
AALAYRSPFVLPLNRKDEAEAAKRSFAGDSCSDHIALLKAYEGWKDAKRNRNEKSFCWEN
FLSPVTMQMIEDMRFQFLDLLAGIGFVNKSQAKAYNQYSDDLEMVCAILCAGLYPNVVQC
KRRGKRTAFYTKEVGKVDIHPGSVNAGVHLFPLPYMVYSEKVKTSSIYLRDSTNISDYAL
LMFGGNLLPSQSGDGIEMLGGYLHFSASKTVLDLIRRLRGELDRLLTRKIKEPALDITVE
GKGVVTAVTELLHSQNVRFR
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgccgtctgcttcccaaccccttccgccataactaccgcgtttttacgcacgct
cccctcccactctcaccggccgcgccccctccgttagtcggaaatccagaaatcaagttt
gttcggatctccaattgcagttccatgtcataccgccccaacgcccaaggcggtcgtcgc
ggcggtcgcggcggcggccgtggaggcggcggcgcaggcagaggtggaggccgtggaggc
cgaggtgagcagcgatggtgggatcctgcttggagagctgagcgtctgcgtcaaatgtct
gcagagaaagagacgatggatcagaatgaatggtggggaaaaatagaacagatgaagact
ggaaatgagcaggagatggtaataaggcgaaacttcggtagagatgatcagcaaatcttg
gctgatatggcttatcaattgggtctacactttcatgcttataataaaggaaaggccctt
gttgtgagcaaagtcccattgcctaattatcgtgcagatcttgatgaacagcatggttcc
actaagaaagagataacaatgtccacagagactgaggaaagagttggacttctattaaaa
agctccaatgggacaaatttagtccagaacaattcttcatcatcttctggatctgcgaca
tgtcaatccaaacctgctgaaatggagagggaagcatcactaccatacattgatactgac
ttcgagaggcttagtcttgatttaaaacagaagcaggaaaagatgagggaaggtgatagt
gtaaaggcaatgctagcatttagagaaaagttgccagcatttaaagtaaaatctgagttc
ttgaaagctgtcgcaagtaaccaggtgctggttgtctcaggagagaccggttgtggtaaa
accacccagcttcctcaatttattttggaagaagagatatcatctctacgaggtgctagc
tgtaatataatatgcactcaacctcgtagaatctcagcaatatcagttgcagctcgaata
tccgctgaaagaggtgaggagctgggtgaaactgtaggttatcagattcgccttgaatca
aaacgctctgctcaaacaagattgcttttttgcacgactggggtgttacttcgacagctg
gttcaggacccagatttaacaggaattactcatttgctggtggatgaaattcatgagaga
ggaatgaatgaggacttcctattaataatattgcgagatatccttcctcgtcgtccaaac
cttcgtgttatccttatgagtgccactattaatgcagagctattctccaaatactttgga
aatgctcctactactcatattcctggattaacgtttcccgttaaggaactttatttagaa
gatttattggagaagactcgttatactgtccaaccagagtctgacaacttaccaagaaat
tcaagaagagggcgtcggcaacaggagtctagcaaagatcctttgacagaattatttgag
aatgcagatattgatgtgctctacaaatcatacagtgcaagcaccaggcaatctcttgag
gcttggtctggttctcagctcgatttgggccttgttgaagcaactattgagcatatctgt
cgccatgaaggtgctggagcaattcttgtcttccttactggttgggatgatatttccaag
cttcttgataaactcagagctaacctttttgttggagacccaaataagttcttagttctt
cctcttcatggttcaatgcctacaatcaatcagcgtgaaatttttgatcgtccacctcat
aatgttagaaagattgtgctagcaaccaatattgccgagagtagtattacgatagatgac
gttgtgtacgttatagattgtgggaaggcaaaggagacgagttatgatgctcttaataag
ctggcttgccttttaccttcatggatttctaaggcatcagctcaccagagacgtggtcga
gctggtcgcgtgcagccaggagtttgctacagattatatcctaaacttatccatgatgct
atgacccagtatcaactgcctgaaatgcttcgaacacctttgcaagagctttgtctgcat
atcaagagtttgcagctcggagtagttagtacatttttgtccaaagcaattcagccacct
gatcctctatcagtagaaaatgcaatcgagcttttgaaaacaattggtgctctagatgat
agggaagagctcactccccttggacagcatcttagcactttgcctttggacccaaatatt
ggaaaaatgcttctgatgggttccattttccagtgcctcaaccctgcactaacaatagct
gctgctcttgcttaccgtagcccgtttgtccttccattaaataggaaagatgaagcagaa
gccgcaaaaagatcatttgctggtgattcatgcagtgaccacattgcacttctcaaagca
tatgaaggatggaaagatgcgaaacgtaatagaaatgaaaaatccttctgttgggagaat
tttctttcaccagtaacaatgcaaatgattgaagatatgagatttcagtttctggattta
ctggcggggattggttttgtcaacaaatcacaagccaaagcatacaatcaatacagtgac
gatttagagatggtatgtgcaatactctgtgctggactctacccaaacgttgtgcagtgc
aaacggaggggaaagcgaacagctttctacactaaagaagttgggaaagttgacattcat
ccgggatccgtcaatgctggtgttcacctttttcctcttccttacatggtttacagtgaa
aaagttaaaaccagtagcatatacctaagagattccaccaacatatcggattatgctctg
ctgatgtttggtggcaatcttcttcctagccaaagtggagatggtattgaaatgcttggt
ggataccttcacttttctgcttcaaagactgtattggacttgatacggagattgcgcggg
gagcttgacaggcttctaacaaggaagattaaggagccagcactagatattacagtagag
ggaaagggtgttgtcacagctgttactgaattgttgcacagtcaaaatgtgcggtttagg
tga
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