Salvia miltiorrhiza (redroot sage): 131020589
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Entry
131020589 CDS
T09291
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03020
RNA polymerase
smil03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
131020589
09124 Replication and repair
03420 Nucleotide excision repair
131020589
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smil03021
]
131020589
03400 DNA repair and recombination proteins [BR:
smil03400
]
131020589
Enzymes [BR:
smil01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
131020589
Transcription machinery [BR:
smil03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
131020589
DNA repair and recombination proteins [BR:
smil03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
131020589
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
Motif
Other DBs
NCBI-GeneID:
131020589
NCBI-ProteinID:
XP_057805487
LinkDB
All DBs
Position
4:complement(53438018..53448034)
Genome browser
AA seq
1833 aa
AA seq
DB search
MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI
DRKMKCETCMANMADCPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEDDPK
FKQAMRIRNPKNRLKKILDACKNKSKCEGGDEIDVRGQDSEEPVKKSRGGCGAQQPKISI
DGMKMVAEYKIQKKKSDDQDQMPEPVERKQLLSAEKVLSILKRITDEDCQLLGLNPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS
EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQIN
LLRYSAWHQETEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDCS
SKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQL
EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQP
LESLKLKRSDFNDMYKYEIDHPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRYQ
LGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKVVV
GDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVAAG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
PGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPKSTIIEEDVEFVTSYFEMPDDDV
DPDKISPWLLRIELNREMMVDKKLNMADISHKINAEFDSDLTCIFNDDNAEKLILRIRIM
NDEAPKGELNDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGFKA
ENEWMLDTEGVNLLAVICHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY
LRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPISGT
PYHDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSP
TSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPTYSPTSPSYNPSARYSPSQAYSP
TSPKITPSSPYSPSSPSYSPTSPSYSPSSPSYSPSSPYSSGANAGYSPSSPQYSPSGGYS
PSAPGYSPSSASQFSTQMDDKDDKSVKDDKGNQ
NT seq
5502 nt
NT seq
+upstream
nt +downstream
nt
atggatctgcggttccccttctcgccggcagaggtcgcgaaagtccgcgtcgtccaattc
ggcattctcagccccgatgagatcagacaaatgtctgttgtgcatatagagcacagcgag
acgacggaaagaggcaagccgaagatcggtggtttgagcgacccgcgtctggggacgatt
gatcggaagatgaagtgcgagacttgtatggcgaacatggctgactgccccggtcacttc
ggtcaccttgagctcgccaaacctatgtttcatattggcttcatgaagactgtgctcagt
attctccgcagtgtctgcttcaattgctctaagattttagcggatgaggacgatcccaag
ttcaagcaagcaatgagaattagaaaccctaagaatagattaaagaagatattagatgcc
tgcaaaaacaaatccaaatgtgaaggaggtgatgagatcgatgtgcgaggtcaagattcg
gaagaacctgtgaagaagtctaggggtggatgcggtgctcagcagccaaagatttctata
gatgggatgaaaatggttgctgaatacaagattcagaagaagaaaagtgatgaccaggac
cagatgcctgaacctgttgaacgaaaacaacttctctctgcagagaaggtgcttagcata
ctgaagagaattactgatgaagattgtcagttgttgggcttgaatccaaaatatgctcgc
cctgactggatgattcttcaagttcttccaatccctcctcctccagttaggccttctgta
atgatggatacttcttctcggagtgaggatgatttaactcatcaactggccatgattatt
aggcataatgagaacttaaagaggcaggagcggaatggggctcctgcacacatcatctca
gagtttgcacagttgctgcagttccatgtggctacatactttgataatgatttacctggt
caaccaagagctacccaaagatctggcagacccattaaatcaatatgtagcaggcttaag
gcaaaagaaggtaggatcagaggtaacttgatgggtaagcgagtagatttttcggctcgg
actgtgattacacctgacccaacaatcaacatcgaccagctgggcgtgccttggagtatt
gccttaaatcttacatatcctgaaactgtaactccatataacatcgaaagattgaaagag
cttgtggaatatggacctcatccccctcctggtaaaactggcgcaaaatatattattagg
gatgatggacagaggcttgatctccggtacttgaaaaagagtagtgatcagcatctagaa
cttggatataaggttgagagacatttaaatgatggagattttgttctgttcaatcggcaa
ccgagtctccataagatgtccattatgggccacagaatcaagattatgccatattcaaca
ttccgcttaaatctgtctgttacctcaccctacaatgctgattttgatggagatgaaatg
aatatgcacgtgccccagtcatttgaaactagagccgaagttctggaattaatgatggtt
ccaaaatgcatcgtgtcacctcaatcaaatcgacctgtaatgggtattgtgcaggataca
ctactaggatgtcgcaaaattactaagagagatacatttattgacaaggatgtttttatg
aacatccttatgtggtgggaggattttgacggcaaagtgcctgctccaacaattctgaaa
cctaagcctctttggactgggaaacaagtatttaatttaatcattccaagacagataaat
ctattaaggtattcagcatggcatcaagaaactgaaaaaggatttattactcctggggat
actcaagtacggatagaaaaaggggagttactttcaggcaccctatgcaagaaaacactc
gggtcatctagtggaagtctcatacatgttatttgggaagaagtcggtccagactgcagc
tcgaaatttttgggacatacacaatggctggtcaattattggcttttgcagaacgctttt
agcatgggaattggagatacaattgctgatcatgatacaatgacgaagatctctgaaact
attaacaaagctaagaatgaggtgaatgaacttatcagggctgcacaagaaaagcaattg
gaagctgagccaggaagaacaatgatggaatcgttcgagaacagagttaaccaggtgttg
aataaggctcgtgatgatgctggaagcagtgctcagaagagcttggcagaaagtaacaac
ctcaaagctatggtcactgcagggtctaagggaagtttcatcaatatttctcagatgact
gcatgtgtgggtcagcagaatgttgaaggcaagcgaattccttttggttttgtggatcgc
acacttccacacttcaccaaagatgattatggtccagagagtcgtggttttgtggagaac
tcatatcttcgaggattgtctcctcaagagttctttttccatgccatgggtggtagggaa
ggtcttattgacactgcagtgaaaacttccgagactggatatattcagaggcgattggtg
aaggctatggaagatatcatggttaagtatgatgggacagttaggaattcgttaggtgat
gtgattcagtttctgtacggggaagatggtatggatgcagtttggattgaatcacagcct
ttggaatcactgaagttgaagagatcggatttcaatgacatgtacaaatatgagattgat
cacccaaactggaatcctaattatatgttgcctgaagctgtggaagatctgaaaacgatt
cgtgaaatccgcagtgtgtttgatgcagaggttcagaaacttgaagccgataggtatcaa
cttggaacagagattgccaccacgggtgacaattcttggcccctccctgttaacatcaag
aggcttgttttgaatgcacagaagacctttagagttgattttcggagaccgtctgatatg
catccaatggagattgtagaagctgttgataagttacaagaaaggcttaaggtggttgtt
ggtgatgattatctgagtttggaagcacagaagaatgctactcttttcttcaatatattg
cttcgtagtgctttagcaagtaaaagggtcctgaaggagtacagacttacccgtgaggct
tttgactgggtagttggcgagatagaatcccgttttcttcagtcacttgttgctgctggt
gaaatgataggatgtgttgctgcacaatccattggtgaacctgctacacagatgaccctc
aatacatttcactatgctggtgtgagtgccaagaatgttactttaggtgttccaaggttg
agggagattattaatgttgctaagaaaattaaaacaccctctctctcggtatacttgaag
cctggtgtaagcaaaactaaggagaaggccaaaaatgtccagtgcgctctggagtataca
accttgcggagtgtaacacaagcaacagaggtatggtacgatccagatcctaagagcact
attattgaggaagatgttgaatttgtgacgtcctactttgagatgccagatgatgatgtt
gaccccgacaagatctctccgtggttgcttcgcatagagttaaacagagaaatgatggtg
gataagaaactcaacatggctgatatttcccataagattaatgctgaatttgatagtgat
ctgacgtgcatatttaatgatgataatgctgaaaagcttatccttcgtattcgtattatg
aatgatgaagcccctaagggtgagttgaatgatgaatctgctgaggatgatgtcttcctc
aaaaagattgagggtaacatgcttacagaaatggctcttcgaggcataccagatatcaat
aaggtgttcataaagaatggcaaggtgaataagtttgatgaaaatgaaggcttcaaggct
gagaatgagtggatgcttgacaccgaaggtgttaatcttttagctgtaatttgccatgaa
gatgtagatgcaagtaggacaacaagcaatcatttgattgaagttattgaagttcttggc
attgaggcagttcgcaaagccttgctggatgagttgcgtgttgtcatatcatttgatggg
tcttacgtgaactatagacatttggctatattgtgtgataccatgacatatcgtggtcac
ttgatggccatcacccgtcatggtatcaatcgcaacgatactggccccatgatgagatgc
tcctttgaagaaacagtggacattcttcttgatgctgctgtgtatgcagaaacagattac
ctcaggggtgtaactgagaatatcatgttagggcagcttgcacctattggcacaggtgat
tgtgctttgtatatgaatgaagagatgctaaaacaagctattgagatccctctgcccagt
tatatggaaggtggactggagtttggcatgactcctggccgttcacccatctcagggacc
ccttatcatgatggcatgatgtcaccaaattatatgctgagcccaaatcttcggttatct
cctgtttcagatgctcagttttctccgtatgtgggcgggatggcgttttctcctacatca
tctccagggtacagcccttcatctcctggatacagcccgtcatctcctggatacagcccc
acctcacctgggtacagtcctacttcccctggttacagccctacgtccccaacatatagt
cctagttctcctggatatagtcctacaagccctgcgtattctcccacaagcccatcttat
tcaccaacgtctccttcctacagcccaacatctcctagctatagccccacatctccgagc
tacagccctacatctccgagctacagcccaacttctccagcatacagcccaacctcacct
gcgtatagcccaacctctccggcttacagccccacgtcgccgtcttacagccccacatca
ccctcttacagccctacatccccctcttacagccccacctctccatcttacagcccaacc
tctccttcatacagcccaacctctccatcgtacagcccaacctcaccatcatatagccca
acctcacctgcctacagcccaacttcgcctggatacagtcccacctcaccaacttacagt
ccaacctcaccaagttacaatccttcagcaaggtatagcccttcacaagcatattcacca
acaagtccaaaaatcacaccttcaagtccgtacagtccatcttctccaagttacagccca
acatcaccatcttattctccttccagtccaagttatagtccaagcagcccgtacagttca
ggagcaaatgcaggctatagtccaagctcgccacagtatagccccagtggtggatactcc
cctagtgcgccagggtactccccatcgtccgccagccaattctccacgcaaatggatgac
aaagatgacaagagtgtgaaggatgacaagggcaatcagtaa
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integrated database retrieval system
