Salvia miltiorrhiza (redroot sage): 131021032
Help
Entry
131021032 CDS
T09291
Name
(RefSeq) phytochrome B
KO
K12121
phytochrome B
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
131021032
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HisKA
HATPase_c
PAS_9
PAS_4
PAS_8
PAS_3
Motif
Other DBs
NCBI-GeneID:
131021032
NCBI-ProteinID:
XP_057806092
LinkDB
All DBs
Position
4:56220164..56224954
Genome browser
AA seq
1140 aa
AA seq
DB search
MAASGGRETQGNNYNTSQAQSSGTPHHQSRNFNQNSSLNRGESMSKAVAQFTADARLHAV
FEQSGESGRSFDYSQSVRTTNQSIPEQQITAYLSKMQRGGHIQPFGCMIAVDESDFRVIA
YSENAREMLALTPQSVPILEKPEFLTIGTDVRSLFTPSSAVLLERAFGAREITLLNPVWI
HSKSSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISHLQSLPGGD
IKILCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYLGLHYPATDIPQAS
RFLFKQNRVRMIVDCHATPLRVIQDESLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLS
LAVIINGSDEDGGKGRHTMRLWGLVVGHHTSARCVPFPLRYACEFLMQAFGLQLNMELQL
ASQLSEKRVLRTQTLLCDMLLRDSPSGIVTQSPSIMDLVKCDGSALFYKGKYYPLGVTPT
EAQIKDIVEWLLAEHGDSTGLSTDSLGDAGYPGAASLGDAVCGMAVAYITSRDYLFWFRS
HTAKEIKWGGAKHHPEDKDDNQRMHPRSSFKAFLEVVKSRSKPWDNAEMDAIHSLQLILR
DSFRDADASKAVVPAPGGDMEIQEMDELSSVAREMVRLIETATAPIFAIDVEGRVNGWNA
KVAELTGLSIEEAMGKSLVHDLVHKESEEVAEKLLFNALRGEEDKNVELRLRTFGTEQHE
KAVYVIVNACSSKDYTNNIVGVCFVGQDVTGQKVVMDKFIHIQGDYKAIVHSPNPLIPPI
FASDENTCCSEWNTAMEKLTGWSRGDVLGKMLVGEIFGSCCRLKGPDAMTTFMVVLHNAI
GGQDADQFPFSFFNKSGKYVQALLTANRRLNMDGQVIGAFCFLQIASPELQQAVRVQKQQ
EKKCFSKMKELAYICQEIKNPLSGIRFTNSLLEATNLTEDQKQFLETSAACEKQMLKIMK
DVDLENIEDGSLEIESAEFVFGSVIDAVVSQVMLLLRERGLQLIRDIPEEVKTLAVCGDQ
VRVQQVLADFLISMARYAQSPEGWVEIQLRPSLKEVSEGVNVVHIEFRIVCPGEGLPPEL
VQDMFHSSRWVSQEGLALSMCRKILKLMKGEVQYIIESERCYFLVALDLPLHRRGLPSAG
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atggctgcttctggaggaagagaaacacaggggaataactacaatacttcacaagctcag
tcttcaggtacgccccatcatcaaagtcgcaattttaaccagaattcgagtttaaacagg
ggggaatctatgagtaaggctgtagctcaattcactgcggatgctaggcttcatgcggtt
ttcgagcaatcaggtgagtccgggagatcctttgattactcacagagtgtgaggactact
aatcaatctattcctgagcagcagatcactgcttatttgtcaaaaatgcagcgtggcggc
cacattcaaccttttggttgcatgatagccgtggacgagtcggattttagggtgattgcc
tactctgagaatgcccgagaaatgctagccttgactccgcagtcggtcccgattcttgag
aagccggagttcttgacaattgggaccgatgtgaggagcctcttcaccccctccagcgct
gtgctgttggagagggcttttggggcaagggagattaccctgctgaatcctgtttggatt
cattccaagagctcggggaagcccttttacgcgattctgcataggatagatgtagggatt
gtgattgacttggagcctgctaggactgaggatcctgccctgtctattgccggtgcagtc
cagtcgcagaagctggccgtccgagccatttcccatttgcagtcactgcctggtggtgat
atcaagattttgtgtgatactgtggttgagagtgtgagggagctcactgggtatgatcgg
gttatggtgtataagtttcatgaggatgagcatggtgaggttgtggctgagagtaagaga
ccagatttagagccatatcttggtttgcattatcctgccacggatataccgcaggcttcg
aggtttttgtttaagcagaatagagtgaggatgattgtggactgtcacgcgactcctctg
agggtcatccaggacgagtcgctgatgcagcccttgtgtttggttggttctacgcttagg
gcgcctcatggttgccacgcccagtacatggcaaacatggggtctattgcctcgttgtcg
ttggctgttatcattaatggaagtgatgaagatggtggtaaaggaaggcatacaatgagg
ctgtggggattggttgttggtcatcacacatcagcaagatgtgtgcctttccctcttcgt
tatgcttgtgaattcctgatgcaggcgtttgggcttcagctgaatatggaattacaactc
gcttctcagttgtcggagaaacgtgttctgaggacacagacactgctgtgtgatatgttg
cttcgagattcaccaagtggtattgtcacacagagccctagtatcatggaccttgtaaaa
tgtgatggatctgctctcttctataaagggaagtattacccccttggggtaacacctacg
gaagcacagataaaggatattgtggagtggttgttggccgagcatggggactcaacgggt
ttgagcaccgatagtctaggtgatgccgggtatcctggggcagcctctctaggtgatgca
gtatgtggaatggctgttgcctacatcacgtcaagagattatttgttctggttccgttcc
cacacagcgaaagagatcaaatggggtggtgccaagcatcatccagaggacaaagatgat
aatcagaggatgcatcctcgttcttcgtttaaggcatttcttgaagtggtcaagagccgg
agtaagccatgggacaatgctgaaatggatgctatacactccctccagctaattttaaga
gattcgtttagagatgctgatgcaagcaaggcagtggtaccagccccaggtggggacatg
gaaattcaagagatggatgaactcagttctgttgctagagaaatggttaggttgattgaa
acggccactgctcccatattcgctatagatgttgaaggccgcgttaatgggtggaacgcc
aaagttgcagagttgacgggcctttccattgaagaagcaatggggaaatccttggttcat
gatcttgtccacaaagaatcagaagaagttgctgagaagcttttgtttaatgctttaaga
ggtgaagaagataaaaatgtagaactgaggttgaggacatttggcaccgaacaacacgaa
aaagctgtgtatgtgattgtcaatgcttgctccagcaaggactacacaaacaatatagta
ggcgtatgcttcgttggtcaagacgttactggccagaaagtggtgatggacaagtttatc
cacattcaaggtgattacaaagcaattgtacacagtcctaacccgctgatcccacctata
tttgcttcggatgagaacacctgttgctccgagtggaacactgccatggaaaagctcact
gggtggagtagaggggatgtcttggggaagatgttagttggggagatatttggaagctgc
tgccggctcaagggcccagatgctatgacaacgttcatggttgtattgcacaacgcaatt
ggaggccaggacgctgatcagttcccattttcctttttcaacaaaagcgggaaatatgtg
caagctctgttgacagcaaacaggcggctgaacatggatggccaggttattggcgccttt
tgcttcctgcagattgctagccctgaattgcagcaggctgtgagagtccagaagcaacaa
gaaaagaagtgtttctcaaagatgaaggagctggcttacatctgtcaagaaataaaaaat
ccgttaagtggcatccgtttcaccaactcactcttggaagctacaaacttgaccgaagac
cagaagcagtttcttgagaccagtgccgcttgtgagaagcagatgttaaagattatgaag
gatgttgatctcgaaaacattgaggatggatcattggagattgagagtgcagaatttgtg
tttgggagtgtaatagacgctgttgttagccaagtgatgttgttgctgagagaaagaggg
ctgcaattgatccgtgatataccagaggaagtcaagactttggcagtctgcggcgatcaa
gttagagttcaacaggtcttggctgattttctgataagcatggcccgatacgcgcaatcc
ccggaaggctgggtggaaattcaacttagaccaagcttgaaggaagtttccgaaggagta
aacgttgtgcacatagagttcaggatcgtgtgcccgggcgaaggtctcccgcctgaactg
gtccaagacatgttccacagcagtcgatgggtgagccaggaaggcctagcgctaagcatg
tgcagaaagattctgaagctgatgaaaggggaagttcaatatatcattgagtcagaacga
tgctacttcctcgttgctctcgatcttcccctgcaccggagaggcttgccgagtgctggc
tga
DBGET
integrated database retrieval system
