Salvia miltiorrhiza (redroot sage): 131021614
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Entry
131021614 CDS
T09291
Name
(RefSeq) replication factor C subunit 3-like
KO
K10756
replication factor C subunit 3/5
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03030
DNA replication
smil03410
Base excision repair
smil03420
Nucleotide excision repair
smil03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131021614
03410 Base excision repair
131021614
03420 Nucleotide excision repair
131021614
03430 Mismatch repair
131021614
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smil03032
]
131021614
03036 Chromosome and associated proteins [BR:
smil03036
]
131021614
03400 DNA repair and recombination proteins [BR:
smil03400
]
131021614
DNA replication proteins [BR:
smil03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
131021614
DNA Replication Termination Factors
ELG1-RFC complex
131021614
Chromosome and associated proteins [BR:
smil03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
131021614
DNA repair and recombination proteins [BR:
smil03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
131021614
Check point factors
HRAD17(Rad24)-RFC complex
131021614
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC_C
RCF1-5-like_lid
DNA_pol3_delta2
AAA_16
HEAT_SCC3-SA
AAA_5
TIP49
DUF7390
Motif
Other DBs
NCBI-GeneID:
131021614
NCBI-ProteinID:
XP_057806855
LinkDB
All DBs
Position
4:39691113..39694754
Genome browser
AA seq
600 aa
AA seq
DB search
MMETSLRPSRIRSGYEPSDTENEVDIPLPRSPAPRRNSKSPYRPRRTYSDLHISRTNSVD
CPFSQSERRPSNPHDNPILFTASERRRYASPLKKDRPSYSRRAASAPRSRLRPRPKHTEL
PEINETVNFDSIDSLFFSRADGDANQPAPLPKPPGYVARSSTSSFLNQNTSTSGMSRQSS
NISERTSASTARFVASRRKNQSETTTWFFCIKKGSCKTSKKSPERERPFDEASFISKAVV
LESLRPLWADKHQPVSLTGFACHKNEAQLLHQLANSEMFPHILLKGLPGTGKKALTMALL
RELYGDSVWNISHDLRYFHILESRPMQVVVPVSSSPHHMELNVYTESKAAYALTALVKQI
SSEFTVTPEISVAPNKAHYKVLVLYDVDKAAENIQHLIKWIMDCYSDCCKLILCCEDDAD
VLDSVKSRCKLISIECSTTHQVMEVLIQIAKKEGFELSTSFASKIANKSKQNLRRAIMAL
EACKLHNYPFAEDQHIPVAWEEAVVELAADILADPSPKRLFTVRGKIQKILADFVHPKLL
LLKLVEQLLRGVDASLKREIYYWYAYYDKRLPSGTSALLKLEEFVAKFMSIYRKSFSNRH
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgatggagacctcgttgcgccccagcagaatcagaagcggctacgagccctccgacacc
gagaacgaagtcgacatccctctgccgcgaagccccgctccaagaagaaacagcaagtcc
ccttacagaccgcgcagaacttactccgatctccacatctcccggactaactccgtcgac
tgccccttctcgcagtccgagcgcaggccttctaatcctcacgataaccccattctcttc
accgcttctgagcgccggaggtatgcctctccgctcaagaaagaccgccctagctacagc
agaagggccgcatccgcgcccaggtcaaggctaaggcccagacccaaacacaccgagctg
cccgagatcaatgaaaccgtcaacttcgacagcatcgactcccttttcttttctcgcgcc
gacggggatgccaatcagccggcgcctctgcctaagccgcctggctacgttgctcggagc
tccacctccagctttctgaatcagaacacttcgacctctggcatgagcaggcagagtagt
aatataagtgagcggacgagtgcgagcactgcgaggtttgtggcgagcagaaggaagaat
cagtcggagacgacgacgtggttcttctgcatcaagaaggggtcttgcaagacttctaag
aagtcgccggagagggagaggcccttcgacgaggcttcttttatcagtaaggctgttgtg
cttgagagcttgaggccgctctgggccgacaagcatcagcctgtttctttgactggattc
gcttgccacaagaatgaagctcagcttcttcaccagctcgcaaacagtgaaatgtttcca
catattttgctgaaagggctgcctggtactggtaagaaggcactcactatggctcttctc
cgtgagctttatggtgattctgtttggaatatatctcatgacttgcgatactttcatatt
ttggaatcgaggccaatgcaagtagtcgttccggtaagttcgagtcctcaccacatggaa
ctcaatgtctacacagagtctaaagcagcatatgcactaacagctctagtgaagcaaatc
agcagcgagtttaccgtcacccctgaaatcagtgtagctcctaacaaggcacattacaaa
gtattggttttatatgatgttgataaggctgcagagaacatacagcacctcataaaatgg
atcatggactgttactcagattgttgcaaacttatcctttgctgtgaggacgatgcagac
gtcctcgactctgtaaagagccgctgcaaactcatcagtattgagtgctccacaactcat
caagtaatggaggtcctcatccagatagccaaaaaggaaggttttgagctatccacaagt
tttgcttcaaagattgctaacaaatcaaagcaaaatttgaggagagcaatcatggcactt
gaagcatgcaagttacacaactatccttttgcggaggaccaacatataccagttgcatgg
gaagaggccgttgtggaacttgctgccgacattttggcagatccttctccaaagagatta
tttactgtgcggggaaagattcaaaaaattctggcggattttgttcatccaaaactatta
ctcctgaaactagttgaacaactccttcgaggagttgatgcaagtttgaaaagggagata
tactattggtatgcatactatgataagagactccctagtggaacaagtgctttactcaag
ttagaagaatttgtggccaagtttatgagcatatatagaaagagtttcagcaatcggcat
taa
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