KEGG   Salvia miltiorrhiza (redroot sage): 131022416
Entry
131022416         CDS       T09291                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
smil  Salvia miltiorrhiza (redroot sage)
Pathway
smil03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:smil00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    131022416
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:smil03021]
    131022416
Enzymes [BR:smil01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     131022416
Transcription machinery [BR:smil03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     131022416
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_1 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5
Other DBs
NCBI-GeneID: 131022416
NCBI-ProteinID: XP_057807867
LinkDB
Position
4:5907911..5921541
AA seq 2096 aa
MEGPLPPAAFEAKIKGIRFTLATRQEISKASISDCPISHASQLSNPFLGLPLDSGKCESC
GTGEAGQCEGHFGYIDLPTPIYHPDHVGELKRMLSLLCLKCLKFKNRKVNSNGVIENLLS
SCCEEASQISINEAKTSDGAYYLELKLPSKSRPKHGCWNFLEKYGFRYGDMNSRPLLASE
VAAMLRKIPQETRKKLSARGYYPQEGYILQYLSVPPNCLSVPDVSDGISTMSTDYSITLL
KKVLRQVEIIKNSRSGNANFESQEIEANDLQAAVAQYFQFRGTGKASRDVDGRFGVNKEE
NVSFTKAWLEKMKTLFIRKGSGFSSRSVITGDPFKGVSEIGLPFEIAQKITFEERVNDQN
MLFLQKLVDEKLCLTYRDGQSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTH
KHSLQALSVYIHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLEAKAEVVELFSVEKQL
LSSHTGNFNLQLATDSLLSLKLLFRKPFLVRAAAQQLAMFVPEALSAPAVMKSRNGPLWT
ASQILQTTFPPSFDCSGERHRICKSEVLYLDYNRDVMASIINDIVTSLFFLKGPKEVLRF
FNSIQPLSMESLHTEGFSVSLKDFFLTRDVLEDIQKEIQKIFPLLCDLRASYSESVALQV
DSYLRSVKIPVTNFIRESSAIGNLIDSKSESALSKVVQQIGFLGIQISSKGKFYSETLVK
DMSSLFRKKYPSYDDSPYEEFGLVGRPLFRGLDPYQEMVHSISSREVIVRSSRGLTEPGT
LFKNLMAILRDVVICYDGSVRNTCSNSIVQFEYGVNSANVASEFCAGDPVGVLAATAMSN
PAYKAVLDSSPSSNSSWDMMKEILLCGVGFKNDIADRRVILYLNNCDCGRKHCQESAALI
VKNHLKKVSLKDTAMEFLMEYRSQLVPESDDVTSGLLVGHIHLNKTQLIQSNISINDILE
KCLDTISLNQKKKKVGTLFKRIELSSSDCCSFCQSSKSKWTDVPCVQFLWQGASDDLLER
ASDFLADTVCPVLLQTVIKGDPRVSAANVIWISPDTATWIRSPCKSPKGELAVDITLEKD
AVKRSGDAWRVVMDSCLPVFHLIDAQRSIPYAIKQVENLLGISCAFEQAVQRLSTSVTMV
TKGVLKDHLLLLGNSMTCAGTLIGFNAGGIKSLSKSLGVQVPFMNATLFTPRKCFERAAE
KCNVDNLSSIVGSCAWGKHVSVGTGSPFEIVWGTKNSELMVDEEIDVYNFLRMVNSSKLE
DTGTSCLGAEIDDLDQDDYMDFDLSPVRESGADKPTFEDGIDFRLDGDNNDGLSKEDDGG
WSSWGKKVGSGVSDWATTAEDSAWGKKVDSEENGWAAKSNKAEESSWGKKVDSEENGWAK
SNKAEESSWGKKVDSEENGWANSNKAEETTRCKKVDSSENDWTKSSEQSTWGNKTAEQSS
WGKNVRSEENDWTKKPEESTSGRKVNSEGNDWRKQPDTSNWAEKVNSRGNDWNKTAEQSS
WGEEEKGNSTWGKKVDSDGGGWGKKDDRNKWAASSSPTKPRDQSDWAAASGGEGRSKINE
QSSSWGAPMTDTQSTWGKNTTKIDDGKSQEGGLWSAPSGAQREAARHEPSNAAGWDQLGS
GTDSLQSDSKDNPWGNSKAADESTHAKASGTWGSSNDWDKFISQSPAGENKESQSNNWGS
SQKQSNVSTPAQGWGSKDDTWGTKVADESTHSKVSSTWGSSNDWGKSDSQSHAGENKESQ
SNNWSSRQSSDTTPTQGWGSPNVDTSTDKDARPQWGGGRGRGRGRGWGRGRSREGSQGRG
PSSDGEWKNRRPRPVDDPNAPGLFTATRQRLDSFTAEEQDVLVEIESIMKSIRRVMHQTG
YNDGDRLSADDQTYIVDNVLNYHPDKAAKIGAGLDYIMVSKHSEFQDSRCFYAVSVDGVE
SDFSYIKCLNNFIKEKYPDKAESFMPKYFKKQQSRPGWNKDRGGGGPPRSEAGTPRGWNS
DSNEAGTPSTWARTPGSQSEAGTPRGWNSDSTLATEEAGTPWAQTPGPQSEAGTPRGWNI
DSTPATEEAGTPWAQTPGPQSEAGTPRGWNSTSTPATEEVGTPWVQTPGPDDAATG
NT seq 6291 nt   +upstreamnt  +downstreamnt
atggaaggccctttaccacccgcagcatttgaggcgaagataaaagggatcagatttact
ctggccactcgtcaggagatttctaaagcatcaatcagcgactgcccaatcagccatgcc
agccagctgtcaaatccatttcttggcctgccacttgatagtggcaaatgcgagtcttgc
ggcacgggtgaggctgggcaatgtgaaggccattttggatacatcgacttgccaactcct
atttaccatcccgatcatgtcggtgagctaaaaaggatgttgagcctactgtgcttgaag
tgcttaaagttcaagaacaggaaggtgaatagtaacggtgttattgaaaatttgttatcc
tcttgctgcgaggaggcctcacaaatatctatcaacgaagccaagactagtgatggggct
tactatttagagctgaaactcccttcgaaatcaagacctaaacacggatgctggaatttt
ttggaaaaatatggattccgttacggagatatgaattctcggccattgcttgcttctgag
gtggcggcaatgctaagaaaaatcccccaggagaccagaaaaaagctctctgcccgaggt
tactaccctcaagaaggatatatcctccagtacttatctgttcctcctaactgtctgtct
gtgcctgatgtttctgatggaatcagtacaatgtctacggattattctataacgttgctt
aaaaaggtgttgagacaagtagagatcataaaaaactcaaggtcagggaatgcaaatttt
gagtctcaggagattgaagccaatgatttgcaagcagccgtggctcaatattttcagttc
aggggcacaggcaaggcttctcgtgacgttgatggtcgctttggagtcaacaaggaagaa
aatgtgtcttttaccaaagcatggcttgagaagatgaaaacgttgtttataaggaaaggc
tctggtttttcttctagaagtgtgataactggtgacccgtttaaaggagtgtcagagatt
gggttgccatttgaaatagcccaaaagataacattcgaggagcgggtaaatgatcagaat
atgctatttttacagaagctggttgatgaaaaactttgcttaacgtacagggatggtcag
tcgacatattccctgagggaaggctcaaaagggcatacatttttgaggcctggtcaagtt
gtgcatcgtaggataatggatggggatattgtcttcattaatagaccaccaactacgcac
aaacattctctacaagctttatcagtttacattcacgatgatcataccgtgaagattaat
cctcttatttgcggtccccttagtgctgattttgatggggattgtatccatttgttttat
ccccaatctcttgaagctaaagcagaggtggtggagctcttctcagtagagaaacagcta
cttagctcccacactgggaacttcaatttgcagctggcaactgactcactgctatcacta
aaattactgtttagaaagccctttttggtacgagcagcagcacagcagttggccatgttt
gtgccggaagcgctatctgcacctgcagtaatgaagtccagaaatggccctctttggact
gcatcacagattttgcagacaacttttcctccatcctttgattgttctggagagagacat
aggatatgcaaaagtgaggtgctgtatctagactacaatagggatgtgatggcctctatc
atcaatgatatagtcacctcacttttcttcttgaagggaccaaaggaggtcttgaggttc
ttcaattctatccagcctttatcaatggaaagtcttcacacagagggttttagtgttagt
ttgaaggactttttccttactcgggatgttttggaggatatccagaaggaaattcagaag
atcttcccgttattgtgtgatttgcgagcttcatatagtgaatcagttgccttgcaagtg
gacagctacttgcgcagtgtgaagatccctgttactaacttcatacgtgagtcttcagca
attggcaacctgatagattccaagagtgaatctgctttgagtaaagtggttcagcagatc
ggtttcttaggaatacaaatatcaagtaaggggaagttctactcggaaactttggtcaag
gacatgtcgtctctgtttcgaaagaaatatccttcttatgatgatagtccttatgaagaa
tttggcttagttggtagacctctctttagaggattggacccctatcaggagatggttcat
tcaatttccagcagagaagtgattgtccgttcaagccgaggattgactgaacctggcaca
ctcttcaagaatttgatggccatccttagagatgttgtcatatgctatgatggtagtgtg
aggaatacgtgcagcaactcaattgttcaatttgagtatggagtgaatagtgccaatgtt
gcaagtgagttctgtgctggtgaccctgttggagttttagctgcaactgccatgtccaat
cctgcttacaaggctgtgctggattcttctccaagtagcaactcctcctgggatatgatg
aaggagatactgctttgtggagttggcttcaagaacgatattgctgaccgccgcgtgatt
ctttacctaaataactgtgattgtggcagaaagcactgccaagaaagtgctgctctgata
gttaagaatcacttgaagaaagttagtctaaaggacacagcaatggagttcctgatggaa
tatagatctcagttggtgcctgaaagtgatgatgtcacttccggccttcttgttggccat
attcatctgaataagacacagttgatacaatcaaatatcagcataaatgatattcttgaa
aagtgtctagacacaatcagtctcaatcagaagaagaaaaaggttggaactctgttcaag
agaattgaattatcatccagtgactgttgctccttttgccaatcttcgaaaagcaaatgg
actgatgttccctgcgtccagtttctttggcaaggggcaagtgatgatctcttagagagg
gcttcggatttcctagccgatacagtttgcccggtgcttttgcagacagtcattaaaggt
gatcctagggtttcagctgcaaacgtaatatggataagtcccgatactgctacctggatc
aggagcccatgtaagagccctaagggtgaattggctgtagatataaccctggaaaaagat
gctgttaaaaggagtggagatgcatggagggtcgtgatggattcttgccttccagttttc
catttgattgatgctcagcgttccattccatatgcaataaaacaagtagaaaatctgctt
ggtatttcttgtgcatttgagcaggctgtacagcgtttgtctacatcagtgacaatggtt
acgaaaggtgtgctcaaggatcatcttcttttgctgggtaatagcatgacatgtgctgga
acgttgattggttttaatgctggtggcatcaagtctctgtccaaatcacttggtgttcaa
gtaccattcatgaacgcaacattatttactcctagaaagtgctttgaaagagcagctgaa
aaatgcaatgttgataatttgtcaagcattgtgggttcatgtgcctggggaaagcacgta
tctgtgggaactggatctccttttgagatcgtttgggggacaaaaaattctgagttgatg
gtggatgaggaaattgacgtgtacaatttcctccgcatggtgaatagctcaaagctggaa
gatacaggcactagttgtctgggagcagaaattgatgatctggaccaggatgactatatg
gattttgatctgtctccagtacgagaatctggtgcagataagcccacttttgaggacgga
attgactttaggcttgatggagataataatgatggattatccaaggaggatgatggggga
tggtcttcttggggtaaaaaagttggctcaggggtaagcgattgggcaacaacagctgaa
gatagtgcctggggtaaaaaagtagattctgaagaaaatggttgggcggcaaagtcaaac
aaggctgaagaaagcagttggggtaaaaaagtagattctgaagaaaatggttgggcaaag
tcaaacaaggctgaagaaagcagttggggtaaaaaagtagattctgaagaaaatggttgg
gcaaactcaaacaaggctgaagaaaccactcggtgtaaaaaagttgattcttcagaaaat
gattggactaaaagttctgaacagagcacttggggtaataagactgctgagcaaagctct
tggggcaaaaatgttcgctctgaggaaaatgattggacgaaaaagcctgaggaaagcact
tcaggtaggaaggtcaattctgaaggaaatgattggaggaaacagcctgatacatccaat
tgggctgaaaaggttaattcaaggggaaatgactggaacaaaactgccgaacaaagctct
tggggtgaagaagagaaaggtaattcaacctggggaaagaaagtagattctgatggagga
ggctggggaaagaaggatgaccggaacaagtgggctgctagttcgagtccaacaaagcct
cgtgatcagtcagattgggcagctgcatctggtggagagggccggagtaaaataaatgag
cagagcagtagttggggtgcacctatgactgatactcagtctacttggggtaaaaatacc
actaaaatagacgatggaaaatctcaggaaggtggcttgtggtcagctccttctggagct
cagagagaggcagctcgtcatgaaccatctaatgctgctggttgggaccaattaggatct
ggtactgactctctccagtcagattcaaaggataatccatggggaaattctaaagcggct
gatgaatcaacccacgcgaaggcttctggtacttggggctcttcaaacgactgggataag
tttatatcgcagtctcctgcaggagaaaacaaagagtctcaatcaaataactggggttca
agccagaaacaatcgaacgtctctacacctgcgcagggttggggttcaaaggacgatacc
tggggaactaaggtggctgatgaatcaactcactcaaaggtttctagtacttggggatct
tcgaatgactggggtaagtctgattcacagtctcatgctggagagaacaaagaatctcag
tcaaataactggagttcaagacagtcaagcgacactacacctactcagggttggggatct
ccaaatgttgatacttccactgacaaagatgcaaggcctcagtgggggggtggtcgtggc
cgaggtcggggtagaggttggggccgaggtcgttccagagaaggttcacaaggtaggggc
ccttcaagtgatggagaatggaagaacaggagacctcgtccagttgatgatcctaatgct
cctgggcttttcactgcaacaaggcagcggttggattcattcactgcagaagaacaagat
gttcttgtggagattgaatcaatcatgaagagcatcagaagagtaatgcatcagacaggg
tacaacgatggtgatcggttatctgctgatgatcagacatacatcgttgataatgtgctc
aattatcatcctgacaaagctgcaaaaataggagctggattagattatatcatggttagc
aagcatagtgagttccaggacagcaggtgcttttatgccgtctctgttgatggcgtggaa
tcagatttctcctacatcaagtgcctcaacaatttcatcaaggagaagtaccccgacaag
gcggaatctttcatgcccaagtacttcaaaaagcaacaatcgcgccctgggtggaacaaa
gaccgtggtggtggtggtcctcctcgtagtgaagctgggacgccccgtggctggaacagt
gattccaatgaagctgggacaccatcaacatgggcacggaccccgggctctcaaagtgaa
gctgggacgccccgtggctggaacagcgattccactctagcgacagaggaagccgggaca
ccatgggcgcagaccccaggtcctcaaagtgaagctgggacgccccgtggctggaacatt
gattccactcctgcaacagaggaagccgggacaccatgggcgcagaccccaggcccgcaa
agtgaagctgggactccccgtggctggaacagcacttccactccagcaacagaggaagtg
gggacgccgtgggtgcagacgccaggccccgatgacgcagctactggttga

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