Salvia miltiorrhiza (redroot sage): 131022455
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Entry
131022455 CDS
T09291
Name
(RefSeq) THO complex subunit 1-like isoform X1
KO
K12878
THO complex subunit 1
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03013
Nucleocytoplasmic transport
smil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131022455
09122 Translation
03013 Nucleocytoplasmic transport
131022455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smil03019
]
131022455
03041 Spliceosome [BR:
smil03041
]
131022455
Messenger RNA biogenesis [BR:
smil03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
131022455
Spliceosome [BR:
smil03041
]
Complex C
Other components
EJC/TREX
131022455
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
131022455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Motif
Other DBs
NCBI-GeneID:
131022455
NCBI-ProteinID:
XP_057807923
LinkDB
All DBs
Position
4:6389163..6398797
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AA seq
603 aa
AA seq
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MISQLHHKMDLFRKAILNPGLPEDFALQTVQQVIKPQKQVKLVQDENMLLENILRTLLQE
LVSAAVQSGEATMHYGQSIADEDARPGQIPRLLDIVLYLCEKEHIEGGMIFQLLEDLTEM
STMRNCKDIFGYIESKQDILGKPELFARGKLVMLRTCNQLLRRLSKANDVVFCGRIIMFL
AHFFPLSERSAVNIKGVFNTSNETKYEKEAPESSSIDFNFYKTFWSLQESFSNPASLAST
VTKWQKFTSSLMVVLNTFEAQPLRDEEGSAINLEDEASNFSIKYLTSSNLMGLELKDPSF
RRHILVQCLILFDYLKAPGKNDKDLPSDTTKEEIKTCEERVKKLLEMTPPRGKEFLHSIE
HILERERNWVWWKRDGCPPFEKPPVEKKLAQDGGRKRRPRWRLGNKELSQLWKWADQNPN
ALTDPQRVRTPAIMDYWKPLAEDMDESAGIEEEYHHKNSRVYCWKGLRFSARQDLEGFSR
FTEHGIEGVVPLELLPLDVRSKYQAKPGDRSKRAKKEETKGSVQQVEDTQIATPASETDM
DGGRNDGEGTTGADGDGSGSGEGDEHQKHNSDTDGGLEAGQIEGDTGMVDGETDADADLD
VVS
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgatttctcagcttcatcacaagatggatttattcaggaaagcaattctgaatccaggg
ctgcctgaagatttcgcgctccagactgtgcagcaagttataaaaccccagaagcaggtg
aaactcgttcaagatgaaaatatgttgttggaaaatattctgcggactttgcttcaagaa
ttggtgtcagctgcagttcagtcaggtgaggcaactatgcattatggtcagtcgatagct
gatgaggatgcacgtcctggtcaaattcctcgtcttcttgacattgtattatacctctgt
gagaaagaacatattgaaggtggcatgattttccagcttttggaagatttgaccgagatg
tctacaatgaggaactgcaaagatatttttgggtacattgaaagtaaacaagacattctt
ggcaagccagagctctttgccagagggaagcttgttatgctgagaacatgcaatcagcta
cttcgtcgtctatcaaaggcaaatgatgttgtgttttgcggacgaattattatgtttctt
gctcattttttcccattatcagaacgttcagctgtcaatatcaaaggagtttttaatact
tcaaacgagaccaaatatgagaaagaagctccagaaagtagttctattgatttcaacttt
tacaaaaccttttggagtttacaggaatccttttccaatcctgcttctctagcttccact
gttacaaagtggcaaaaatttacttccagtttgatggtcgtgttgaatacatttgaggct
cagcctctgagggatgaagagggcagtgctattaaccttgaggatgaagcgtcaaacttc
agtataaaatatctcaccagcagtaatctaatgggtctggagttaaaagatccaagtttt
cgacgacacattctggttcagtgccttattttgtttgattacttaaaggcccctgggaaa
aatgacaaagatttgccatcggatacaacgaaagaggagataaaaacttgtgaagaacgg
gtgaagaagcttctagagatgacacctcctagagggaaagaattccttcatagcattgag
catattttggagcgtgagaggaactgggtatggtggaagcgtgatggttgccctccattt
gaaaaaccacccgtagagaaaaagctagctcaagatggtggtcggaagcgtcgtcctcgg
tggagactggggaataaggaactgtctcagttgtggaaatgggctgatcagaacccgaat
gctctaacagatcctcaacgtgtccgtactcctgccatcatggattactggaaaccgttg
gctgaagatatggacgaatctgctggaatagaagaagaatatcatcacaaaaatagccga
gtttattgctggaaaggtttgaggttttctgcgcgacaagatctggaaggattttcgcga
tttactgaacatggcattgaaggtgttgttcccttggaacttttgccacttgatgtgcgg
tcaaaatatcaagctaaaccaggtgatcgatccaagcgtgccaagaaggaagagacaaaa
ggttccgtgcagcaagtcgaagacactcagattgcgacacctgcgagtgagactgacatg
gacgggggcagaaacgacggtgaaggcacaacgggtgcggatggtgatggtagtggaagt
ggtgagggtgatgagcatcagaaacacaactctgatacagatggcggtttggaagcaggc
caaattgaaggagatactggaatggttgatggagagacggatgccgatgctgacttagat
gttgtatcttga
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